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openvar / variantValidator

Public repository for VariantValidator project
GNU Affero General Public License v3.0
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LOVD Endpoint Internal Server Error #597

Closed nathandloria closed 2 months ago

nathandloria commented 3 months ago

When utilizing the LOVD endpoint of the API, the following variant entry produces an internal server error (HTTP code 500):

chr7-55248999-TGGCCAGCGTGGAC-TGGCCAGCGTGGCCAGCGTGGAT

To reproduce, the following command can be run:

curl -X 'GET' \ 'https://rest.variantvalidator.org/LOVD/lovd/hg19/chr7-55248999-TGGCCAGCGTGGAC-TGGCCAGCGTGGCCAGCGTGGAT/all/all/False/False?content-type=application%2Fjson' \ -H 'accept: application/json'

I am unsure of the expected behavior but this seems to be the only variant that I have tested to cause this issue.

Capture

This could be an expected error and I am just unaware, just wanted to check and see. Thanks!

Peter-J-Freeman commented 2 months ago

good timing @nathandloria. We are just working on these resources. Let me get back you

Peter-J-Freeman commented 2 months ago

This is now corrected. Will submit a PR and will update on the next release.

Peter-J-Freeman commented 2 months ago

p.s. @nathandloria hope to push new changes to servers in the next couple of weeks. Going through dev at the moment. This variant is creating a bug so will error out at the moment

nathandloria commented 2 months ago

@Peter-J-Freeman awesome, thank you for looking into it! I appreciate the quick response. Also, this is an awesome project so thank you for the hard work.

Peter-J-Freeman commented 2 months ago

no problem @nathandloria. Hey, drop us a line on the https://variantvalidator.org/help/contact/ page if you fancy. Always great to hear how the tool is being used. Helps us understand our user base so we can unlock funding.

Thanks