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openvax / mhcflurry

Peptide-MHC I binding affinity prediction
http://openvax.github.io/mhcflurry/
Apache License 2.0
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support more alleles #88

Closed timodonnell closed 6 years ago

timodonnell commented 7 years ago

The following alleles are supported by netMHC but not mhcflurry. Some of these are <100 data points (our threshold, which perhaps we should revise), and others are MHC allele naming issues since we skip anything where mhcnames.normalize_allele_name throws an error


['BoLA-AW*10:01',
 'BoLA-D1801',
 'BoLA-HD*06:01',
 'BoLA-JSP01',
 'BoLA-T*02:01',
 'HLA-A*03:02',
 'HLA-A*03:19',
 'HLA-A*32:07',
 'HLA-A*32:15',
 'HLA-A*68:23',
 'HLA-B*14:01',
 'HLA-B*27:20',
 'HLA-B*37:01',
 'HLA-B*40:13',
 'HLA-B*57:03',
 'HLA-B*58:02',
 'HLA-B*81:01',
 'HLA-E*01:01',
 'HLA-E*01:03',
 'Mamu-A*201:02',
 'Mamu-A*701:03',
 'SLA-10401',
 'SLA-10701',
 'SLA-20401',
 'SLA-30401']
timodonnell commented 6 years ago

Version 1.0 expanded support to 124 alleles by lowering data threshold to 75 data points, closing for now