openvax / mhcflurry

Peptide-MHC I binding affinity prediction
http://openvax.github.io/mhcflurry/
Apache License 2.0
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implement multi-process (single node) parallelization for training and predicting #95

Closed timodonnell closed 6 years ago

timodonnell commented 7 years ago

@rohanpai has done some proof of concept work on this and has found it can be a big win when using CPU

Should be exposed the same as scikit-learn handles parallelism using joblib. For example, see the n_jobs argument here: http://scikit-learn.org/stable/modules/generated/sklearn.ensemble.RandomForestClassifier.html