how to install api not in mhctools

openvax / mhctools

Python interface to running command-line and web-based MHC binding predictors

Apache License 2.0

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Closed worker000000 closed 5 years ago

worker000000 commented 5 years ago

from mhctools import NetMHCpan predictor = NetMHCpan(alleles=["A*02:01", "hla-a0101"])

this wiill raise error "FileNotFoundError: [Errno 2] No such file or directory: 'netMHCpan': 'netMHCpan'"

and I tried to download the api file, where should I put the file for mhctools to know where the api is thanks a lot

iskandr commented 5 years ago

Hey @2236529177 -- you have to download and install the NetMHCpan tool from http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHCpan