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openvax / mhctools

Python interface to running command-line and web-based MHC binding predictors
Apache License 2.0
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configure netMHC #141

Open 0x1orz opened 5 years ago

0x1orz commented 5 years ago

when i test mhctools --sequence SIINFEKL SIINFEKLQ --mhc-predictor netmhc --mhc-alleles A0201,I got the error ---FileNotFoundError: [Errno 2] No such file or directory: 'netMHC'.

How to configure the command lines? even i use alias netMHC or export netMHC the netMHC real path, that could not be soved

zakimolvi commented 4 years ago

@sheljoy In case you didn't solve this yet, it sounds like your PATH variable may not include the directory of your local netMHC installation. This is similar to #8 .

Make sure your PATH variable includes the directory of your local NetMHC installation(s), e.g when I type: >echo $PATH outputs: ...:/Users/zaki/netMHCpan-4.0:/Users/zaki/netMHC-4.0:..