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openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
75 stars 25 forks source link

Adding the ability to run outside of Docker #112

Closed julia326 closed 6 years ago

julia326 commented 6 years ago

Works by editing the input config file with optional directory overrides, writing the results to a temp file and using that for the Snakemake run.