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openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
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Saved unmapped RNA reads in SAM/BAM output #121

Open iskandr opened 6 years ago

iskandr commented 6 years ago

Use --outSAMunmapped Within option for STAR (https://ycl6.gitbooks.io/rna-seq-data-analysis/mapping_with_star.html)