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openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
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How do we make `copy-to-gcloud.sh` a part of the pipeline? #123

Open iskandr opened 5 years ago

iskandr commented 5 years ago

Is running everything within docker the obstacle to copying out "final" results to GCloud?

iskandr commented 5 years ago

One idea is to combine the docker run command with the copy-to-gcloud.sh script into a single outside-of-docker entry point. This would also make it easier to pass the config file path as an argument (rather than its mounted path within a Docker volume).