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openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
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check if files exist before trying to copy them to gcloud #140

Closed iskandr closed 5 years ago

iskandr commented 5 years ago

I made two helper functions:

(1) check/copy files or directories to gcloud if they exist (2) loop over a glob/pattern and copy every matching file to gcloud

I also tried to clean up my shell hygiene, like using double brackets and double quoting all variables.