--run-qc only works with --qc-metrics-file for now

openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

Apache License 2.0

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Closed julia326 closed 5 years ago

julia326 commented 5 years ago

Need to decouple so that it's possible to just run FASTQC

julia326 commented 5 years ago

New plan: incorporate a default --qc-metrics-file with some sensible values, to not expect the user to provide one.