Failed to call strelka2

[marcogao2019]

Hi, after calling /home/user/strelka/libexec/callSomaticVariants.pl, I got the "ERROR: Failed system call: '/home/user/strelka/libexec/strelka2 -clo...'". Could u give any clue to fix it? thanks

this is my yaml example: input: id: tesla_melanoma_2_patient_4 mhc_alleles:

• HLA-A*02:01
• HLA-B*15:01 normal:
  • fragment_id: L001 type: single-end r: /inputs_patient_4/patient04_normal.fastq.gz tumor:
  • fragment_id: L001 type: single-end r: /inputs_patient_4/patient04_tumor.fastq.gz rna:
  • fragment_id: L001 type: paired-end r1: /inputs_patient_4/patient04_tumor_rna_1.fastq.gz r2: /inputs_patient_4/patient04_tumor_rna_2.fastq.gz workdir: /outputs_patient_4 reference: genome: /reference-genome/b37decoy/b37decoy.fasta dbsnp: /reference-genome/b37decoy/dbsnp.vcf cosmic: /reference-genome/b37decoy/cosmic.vcf transcripts: /reference-genome/b37decoy/transcripts.gtf capture_kit_coverage_file: /reference-genome/b37decoy/S04380110_Covered_grch37_with_M.bed parallel_indel_realigner: true mhc_predictor: netmhcpan-iedb variant_callers:
  • mutect
  • strelka