Update to use modern tooling

openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

Apache License 2.0

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Closed julia326 closed 7 months ago

julia326 commented 7 months ago

Details:

Base Ubuntu image 22.04
Strelka 1 -> Strelka 2, installed with conda
OpenVax Python stack update: vaxrank 1.0.0 -> 1.4.0 (also necessitated bumping other tools in the stack)

Removing a few things for now:

timodonnell commented 7 months ago

Nice! Is this working? Should we try it out on some old data?