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openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
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report bug #156

Open Cosmos9526 opened 3 months ago

Cosmos9526 commented 3 months ago

Hi dear Julia there is a problem in docker that I solved with the following workaround this is docker file that I pulled openvax/neoantigen-vaccine-pipeline latest 96bd80f51521 14 months ago 5.52GB docker run --entrypoint /bin/bash -it openvax/neoantigen-vaccine-pipeline:latest

docker run --entrypoint /bin/bash -it -v /home/ubuntu/0milad:/home/user/0milad openvax/neoantigen-vaccine-pipeline:latest

solving command " pip uninstall polars gtfparse pip install polars==0.12.5 gtfparse==1.2.1 pyensembl install --release 75 --species homo_sapiens

"

thanks and best wish Milad