openvax / neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Apache License 2.0
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Add MultiQC #20

Open iskandr opened 6 years ago

iskandr commented 6 years ago

MultiQC aggregates analysis logs from other tools (like FastQC, FastQ Screen and many others) into a pretty multi-sample report.

Quick Start:

conda install -c bioconda multiqc
multiqc .
iskandr commented 6 years ago

Individual tools to run from Picard:

Insert size metrics: https://broadinstitute.github.io/picard/picard-metric-definitions.html#InsertSizeMetrics

Alignment summary metrics: https://broadinstitute.github.io/picard/picard-metric-definitions.html#AlignmentSummaryMetrics

julia326 commented 5 years ago

Will start with fastqc