Open iskandr opened 6 years ago
Individual tools to run from Picard:
Insert size metrics: https://broadinstitute.github.io/picard/picard-metric-definitions.html#InsertSizeMetrics
Alignment summary metrics: https://broadinstitute.github.io/picard/picard-metric-definitions.html#AlignmentSummaryMetrics
Will start with fastqc
MultiQC aggregates analysis logs from other tools (like FastQC, FastQ Screen and many others) into a pretty multi-sample report.
Quick Start: