EnsemblReleaseSource is not used

openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Apache License 2.0

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EnsemblReleaseSource is not used #105

Closed tavinathanson closed 9 years ago

tavinathanson commented 9 years ago

Noticed by @iskandr. This creates the following issues:

The install string printed in error messages is incorrect (no release number).
The Ensembl-specific local/remote transform is ignored.

This should be fixed by actually using EnsemblReleaseSource internally.

tavinathanson commented 9 years ago

This also resulted in a super weird bug, with varcode tests complaining about missing FASTA information. Because the logic to add the release number to the FASTA filename is not currently included, the FASTA information for one release can clobber that of another!