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openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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When sequence data is not provided, error gracefully #106

Closed tavinathanson closed 9 years ago

tavinathanson commented 9 years ago

Right now, when sequence data is not provided, we just run into an undefined variable.

For example, in transcript.py (stolen from @iskandr):

if self.sequence is None:
    raise ValueError("No 3' UTR sequence for %s" % self)
tavinathanson commented 9 years ago

We should also error gracefully when GTF data is not provided.

tavinathanson commented 9 years ago

Fixed by #108