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openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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HGNC Genes #125

Open ahmdeen opened 9 years ago

ahmdeen commented 9 years ago

Is there a way to filter genes returned to only return ENSG's of HGNC genes in Ensembl? Maybe this should be added as a function.

iskandr commented 9 years ago

@ahmdeen Do you know of a good Python library for mapping between Hugo gene names and Ensembl IDs?

gokceneraslan commented 4 years ago

Why not integrating this file here:

https://www.genenames.org/cgi-bin/download/custom?col=gd_app_sym&col=gd_status&col=gd_aliases&col=gd_pub_acc_ids&col=gd_pub_refseq_ids&col=gd_pub_ensembl_id&status=Approved&status=Entry%20Withdrawn&hgnc_dbtag=on&order_by=gd_app_sym_sort&format=text&submit=submit

dhimmel commented 4 years ago

Does pyensembl have any mapping abilities to non-ensembl resources? For example, can it access the ensembl provided mappings to external resources?