moved polymorphic_pseudogene to noncoding biotype group

openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Apache License 2.0

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moved polymorphic_pseudogene to noncoding biotype group #149

Closed iskandr closed 8 years ago

iskandr commented 8 years ago

This change is

iskandr commented 8 years ago

Inspired by: https://github.com/hammerlab/topiary/issues/53

coveralls commented 8 years ago

Coverage remained the same at 80.284% when pulling 485437347137e523cd56659dedbc328bd9d255d0 on fix-pseudogenes-in-biotypes into 53eb759c9e0fca4d8cf987b9bd6122b2806e4080 on master.

arahuja commented 8 years ago

👍 I’m not sure what impact it has on other tools - does something look into coding_pseudogenes?

iskandr commented 8 years ago

@arahuja Kipp was running into trouble with a polymorphic pseudogene in Topiary. Seemed safer to just move that biotype to something separate.