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openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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Incorrect normalization of "chrM" on GRCh38 to "MT" #225

Closed iskandr closed 5 years ago

iskandr commented 5 years ago 
from varcode import Variant

Variant("chrM", 1, "C", "G") 
# Variant(contig='MT', start=1, ref='C', alt='G', reference_name='GRCh38')