Open gokceneraslan opened 4 years ago
It would be great to have a generic .get_sequence(self, contig, position, end, strand) function in the Genome class which extracts sequence from the genome given a range. This is similar to getSeq function in BSgenome package in R:
.get_sequence(self, contig, position, end, strand)
getSeq(Celegans, 'chrI', start=100, end=200, strand='+')
.transcript_sequence() and .protein_sequence() can also use this function.
.transcript_sequence()
.protein_sequence()
Right now, it's not possible to get the full sequence of a gene including UTRs and introns. That'd make it easier for example.
It would be great to have a generic
.get_sequence(self, contig, position, end, strand)function in the Genome class which extracts sequence from the genome given a range. This is similar to getSeq function in BSgenome package in R:.transcript_sequence()and.protein_sequence()can also use this function.Right now, it's not possible to get the full sequence of a gene including UTRs and introns. That'd make it easier for example.