Open zhoutianrui-tongji opened 3 years ago
That's a bit late but for those facing the same issue, the species
argument of the EnsemblRelease
class requires an object of the class pyensembl.species.Species
. Thus, just type:
from pyensembl import EnsemblRelease
from pyensembl.species import mouse
# release 107 uses mouse reference genome GRCm39
data = EnsemblRelease(107, species = mouse)
I do "pyensembl install --release 102 --species mouse" .it works. but when i do this :
from pyensembl import EnsemblRelease data = EnsemblRelease(102,specise="mouse")
ValueError: Missing genome data file from ftp://ftp.ensembl.org/pub/release-102/gtf/homo_sapiens/Homo_sapiens.GRCh38.102.gtf.gz. Run pyensembl install --release 102 --species homo_sapiens