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openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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"genome" was provided but still raise an error #254

Open limin321 opened 3 years ago

limin321 commented 3 years ago

Hi,

I want to extract a cDNA sequence by running the following code:

print(transcript.Transcript('MYO6-204','6',75749239,75919537,'+','protein_coding','ENSG00000196586','GRCh38'))

However, it raised some error showed as below

"

Screen Shot 2021-05-23 at 9 42 57 AM

"

I thought "'GRCh38'" will specify which genome to research, why still have this issue?

Can anyone help what might go wrong with my code?

Thanks in advance.

Best, LC