openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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Can't install v2.2.2 using pip -> requirements.txt missing #274

Closed Cloufield closed 1 year ago

Cloufield commented 1 year ago

Hi, Thanks a lot for your wonderful package! I am trying to update to the latest version but it seems that the 'requirements.txt' file is missing? (which seems to be changed in the last commit)

pip install pyensembl==2.2.2
...

Complete output (5 lines):
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/private/var/folders/bm/8twyqzpn187fhqq_p7b1_zrm0000gn/T/pip-install-dq_nkzey/pyensembl/setup.py", line 44, in <module>
        with open("requirements.txt") as f:
    FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt'
    ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
iskandr commented 1 year ago

Oof, sorry about that, I guess need to add it to the package data.

I'll fix it a little later today.

On Fri, Dec 2, 2022, 3:51 AM Yunye @.***> wrote:

Hi, Thanks a lot for your wonderful package! I am trying to update to the latest version but it seems that the 'requirements.txt' file is missing? (which seems to be changed in the last commit)

pip install pyensembl==2.2.2 ...

Complete output (5 lines): Traceback (most recent call last): File "", line 1, in File "/private/var/folders/bm/8twyqzpn187fhqq_p7b1_zrm0000gn/T/pip-install-dq_nkzey/pyensembl/setup.py", line 44, in with open("requirements.txt") as f: FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt'

ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

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iskandr commented 1 year ago

Fixed by https://github.com/openvax/pyensembl/pull/275