Release version 2.3.0 - Githubissues

openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Apache License 2.0

365 stars 68 forks source link

Release version 2.3.0 #295

Closed y9c closed 4 months ago

y9c commented 6 months ago

Could you help release a new minor version to include the update on species file.

add 3 new species
fix error of minor species release version
format code with black formatter

y9c commented 6 months ago

New feature:

list all available species to be download (https://github.com/openvax/pyensembl/issues/296)

y9c commented 6 months ago

Bug fix:

https://github.com/openvax/pyensembl/issues/297

y9c commented 6 months ago

Support plant and fungi genome. Close: https://github.com/openvax/pyensembl/issues/298

pyensembl install --species rice

y9c commented 6 months ago

Merge with: https://github.com/openvax/pyensembl/pull/293/files

iskandr commented 6 months ago

Sorry for the long delay, I just merged the branch which finishes migrating unit tests to pytest, fixed a few misc. bugs (including figuring out correct Ensembl release versions for C. Elegans).

If merging the new code with this branch is too much work I can take a stab at porting over isolated enhancements like new species.

y9c commented 6 months ago

Hi @iskandr,

I have fixed the conflict with the main branch. Could you provide some suggestion for future edit?

iskandr commented 4 months ago

Hey @y9c -- I've been cleaning up the OpenVax tools and hopefully catching some of the features from your PRs in those changes. If there's anything I have missed can you open those up as new issues or smaller scoped PRs?