openvax / pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Apache License 2.0
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Similar to the list subcommand, a subcommand to list all available release to download is necessary. #296

Open y9c opened 6 months ago

y9c commented 6 months ago
$ pyensembl available

* homo_sapiens (human):
  * GRCh38: (76, 110)
  * GRCh37: (55, 75)
  * NCBI36: (54, 54)
* mus_musculus (mouse,house mouse):
  * NCBIM37: (54, 67)
  * GRCm38: (68, 102)
  * GRCm39: (103, 110)
* canis_familiaris (dog):
  * CanFam3.1: (75, 110)
* felis_catus (cat):
  * Felis_catus_6.2: (75, 90)
  * Felis_catus_8.0: (91, 92)
  * Felis_catus_9.0: (93, 110)
* gallus_gallus (chicken):
  * Galgal4: (75, 85)
  * Gallus_gallus-5.0: (86, 110)
* rattus_norvegicus (brown rat,lab rat,rat):
  * Rnor_5.0: (75, 79)
  * Rnor_6.0: (80, 104)
  * mRatBN7.2: (105, 110)
* macaca_fascicularis (macaque,Crab-eating macaque):
  * Macaca_fascicularis_6.0: (103, 110)
* chlorocebus_sabaeus (green_monkey,african_green_monkey):
  * ChlSab1.1: (86, 110)
* macaca_mulatta (rhesus):
  * Mmul_10: (75, 110)
* oryctolagus_cuniculus (rabbit):
  * OryCun2.0: (75, 110)
* meriones_unguiculatus (gerbil):
  * MunDraft-v1.0: (75, 110)
* mesocricetus_auratus (syrian_hamster):
  * MesAur1.0: (75, 110)
* cricetulus_griseus_chok1gshd (chinese_hamster):
  * CHOK1GS_HDv1: (75, 110)
* heterocephalus_glaber_female (naked_mole_rat):
  * HetGla_female_1.0: (75, 110)
* cavia_porcellus (guinea_pig):
  * Cavpor3.0: (75, 110)
* sus_scrofa (pig):
  * Sscrofa11.1: (75, 110)
* danio_rerio (zebrafish):
  * Zv8: (54, 59)
  * Zv9: (60, 79)
  * GRCz10: (80, 91)
  * GRCz11: (92, 110)
* drosophila_melanogaster (drosophila,fruit fly,fly):
  * BDGP5: (75, 78)
  * BDGP6: (79, 95)
  * BDGP6.22: (96, 98)
  * BDGP6.28: (99, 102)
  * BDGP6.32: (103, 110)
* caenorhabditis_elegans (nematode,C_elegans):
  * WS200: (55, 57)
  * WS210: (58, 60)
  * WS220: (61, 66)
  * WBcel235: (67, 110)
* saccharomyces_cerevisiae (yeast,budding_yeast):
  * R64-1-1: (75, 110)