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openvax / topiary

Predict mutated T-cell epitopes from sequencing data
Apache License 2.0
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TopiaryPredictor #81

Closed iskandr closed 6 years ago

iskandr commented 6 years ago

We currently have two top-level functions called predict_epitopes_from_variants and predict_epitopes_from_effects with a very large number of arguments. Creating another top-level function (e.g. to predict from protein changes without genomic variants) would require duplicating a lot of thing long argument list. To make it easier to add features in the future I'm making a TopiaryPredictor object which holds properties shared between different top-level methods.

This change is Reviewable

coveralls commented 6 years ago

Coverage Status

Coverage increased (+0.3%) to 87.556% when pulling cb77980a874b35adfb44d47aba42a3bd62061ec1 on TopiaryPredictor-object into a90625cee5f7d175c14411fc0f8134ee257c36d5 on master.

coveralls commented 6 years ago

Coverage Status

Coverage increased (+0.3%) to 87.528% when pulling b6654a4f6b9ee9c23e75d9fe7c8e7ec9bc345948 on TopiaryPredictor-object into a90625cee5f7d175c14411fc0f8134ee257c36d5 on master.