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openvax / vaxrank

Ranked vaccine peptides for personalized cancer immunotherapy
Apache License 2.0
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Use Isovar for all variant counts, change Python versions in tests to 3.6 and 3.7 #191

Closed iskandr closed 4 years ago

iskandr commented 4 years ago

Hopefully fixes: https://github.com/openvax/vaxrank/issues/190

Also added has_vaccine_peptide to all passing variants alongside mhc_binder. They currently have identical values but eventually we could allow MHC ligand counts even for variants without RNA support.

ALSO: one of our dependencies, BioPython, no longer supports Python 2.7 or Python 3.5. Rather than pin on an old version, I'm just removing Python 2.7 and 3.5 from the Travis test matrix and using versions 3.6 and 3.7.

THE TIME HAS COME.

coveralls commented 4 years ago

Coverage Status

Coverage decreased (-0.2%) to 87.981% when pulling 7e808cee1cb663141d67fc42055935f29972a148 on use-isovar-for-all-variant-counts into 653febf773a90346580f097b80ddc1a2fc1ff792 on master.