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openworm
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CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
http://opensourcebrain.org/projects/celegans
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Separation of Generic Cell into Generic Muscle and Neuron Cells, with new optimized values. Implemented on all levels.
#64
ed5000
closed
8 years ago
1
What would it take to replay a specific pattern of activity into certain c302 neurons during a simulation run?
#63
slarson
opened
8 years ago
1
Can c302 with jNeuroML-NEURON take advantage of multiple CPU cores?
#62
slarson
opened
8 years ago
3
Attempt to match named cells in Kato paper
#61
slarson
closed
8 years ago
3
What would it take to include activity dependent conductances?
#60
slarson
opened
8 years ago
0
Python scripts tester
#59
brijeshmodi12
closed
8 years ago
5
directory comment added
#58
nmsutton
closed
8 years ago
0
Make OpenSourceBrain's visualization of this repo include Hive Plots
#57
slarson
closed
6 years ago
8
Make it easier to get at simulation results
#56
slarson
closed
6 years ago
38
Update setup.py
#55
pgleeson
closed
8 years ago
0
Problem installing
#54
tnaoi
closed
8 years ago
6
Test python scripts
#53
travs
opened
9 years ago
4
Ensure consistent directory structure and naming schemes for tests
#52
gsarma
opened
9 years ago
0
Check for performance regressions in testing suite
#51
gsarma
opened
9 years ago
0
Create tests to catch performance regressions in specific functions
#50
gsarma
opened
9 years ago
4
Use OpenWormReader to generate connectome
#49
travs
closed
8 years ago
6
Introduces setup.py & Fixes #47
#48
slarson
closed
9 years ago
3
Create a setup.py for CElegansNeuroML & c302
#47
slarson
closed
9 years ago
0
Added script to read data from PyOpenWorm
#46
aleph-ra
closed
9 years ago
1
Full implementation in WormSim
#45
travs
opened
9 years ago
0
Design WormSim UI additions for the muscle neuron model
#44
travs
opened
9 years ago
0
Run/visualize motor neuron network in Geppetto
#43
travs
closed
6 years ago
1
Run multi-scale optimization for motor neuron network
#42
travs
opened
9 years ago
0
Create a multi-level optimization scaffold that tunes motor neuron network parameters to fit within physiological bounds
#41
travs
opened
9 years ago
1
Create appropriate tests to constrain motor neuron network parameters within physiological bounds
#40
travs
opened
9 years ago
0
Construct target quantitative/qualitative electrophysiological behaviour
#39
travs
opened
9 years ago
0
Verify that the neurons, channels and parameters for this subnetwork are visible in the model completion dashboard
#38
travs
opened
9 years ago
0
Create validation tests for all gap junctions between key motor neurons
#37
travs
opened
9 years ago
0
Create validation tests for all synapses between key motor neurons
#36
travs
opened
9 years ago
0
Embed best-guess ion channels in motor/neuron cell models
#35
travs
opened
9 years ago
0
Make a best guess for ion channels in relevant cells
#34
travs
opened
9 years ago
2
Document the tests in c302
#33
travs
opened
9 years ago
0
Validate two tests of c302 connectivity using SciUnit
#32
travs
opened
9 years ago
1
Run tests using the pytest framework rather than standard unittests
#31
travs
opened
9 years ago
4
Run c302 README examples in doctests
#30
travs
opened
9 years ago
0
Make sure there are examples in the README for key functions of c302
#29
travs
opened
9 years ago
0
Change data source to PyOpenWorm in unit tests
#28
travs
opened
9 years ago
9
Adapt current data loading process in c302.py to pull data from PyOpenWorm
#27
travs
closed
4 years ago
17
Question on simulations
#26
CliffracerX
closed
9 years ago
4
Draft workflow outline for validation tests
#25
travs
opened
9 years ago
0
Change the path for c302tuner.py
#24
VahidGh
closed
9 years ago
3
adding CompareMain.py
#23
aribrich
closed
8 years ago
6
Initial implementation of parameters C
#22
pgleeson
closed
9 years ago
0
Pull request to get Ari's changes
#21
slarson
closed
9 years ago
6
Clean up/check neuroConstruct project & generated NeuroML files
#20
pgleeson
closed
9 years ago
2
Adding data sanity unit tests for c302
#19
aleph-ra
closed
9 years ago
9
Replace the _GJ .nml files with an "innexin" model
#18
slarson
closed
9 years ago
3
Problem with NeuroML loaders and individual cell .nml
#17
wilzh40
closed
10 years ago
3
Implements custom weight setting in c302
#16
pgleeson
closed
10 years ago
0
"ImportError: cannot import name IafCell" when running test.sh under c302
#15
slarson
closed
10 years ago
5
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