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openworm / ChannelWorm2

Tools and curated datasets to build quantitative models of C. elegans ion channels
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Investigate NeuroTune/Inspyred or BluePyOpt for parameter fitting #15

Open gsarma opened 6 years ago

gsarma commented 6 years ago

There are now well-implemented frameworks for ion channel modeling that we can likely use with some modification. The primary packages to look into are NeuroTune/Inspyred and BluePyOpt/DEAP.

For a bare-bones implementation that may be useful as an introduction to using genetic algorithms for ion channel modeling, see parameter_fitting/basic_fitter.

gsarma commented 5 years ago

@travs you might want to look at this.