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openworm / ChannelWorm2

Tools and curated datasets to build quantitative models of C. elegans ion channels
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Document CWFitter #2

Closed gsarma closed 6 years ago

gsarma commented 6 years ago

The parameter fitting scripts CWFitter need to be documented. I created a new branch called CWFitterDoc that includes Jupyter notebooks for the ion channel scripts that are in the examples folder. I've started on breaking down the code into more modular pieces and have added in a few scattered comments. Any help would be appreciated!

@rgerkin @slarson

gsarma commented 6 years ago

After discussion with @rgerkin , we decided that it might be best to discontinue this effort. We have a slimmed down implementation of the techniques in Gurkiewicz and Korngreen that work successfully for EGL-19 (see the tutorials_etc folder)and will try to re-implement the basic logic of this setup using either Inspyred/Neurotune or DEAP/BluePyOpt.