Download and have a look at the first candidate standard worm dataset

openworm / OpenData

Repo for Google Summer of Code Open Data Project 2019

MIT License

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Download and have a look at the first candidate standard worm dataset #6

Closed slarson closed 5 years ago

slarson commented 5 years ago

[x] Download and orient to the contents: https://www.dropbox.com/sh/aansr9pv1fl3s8p/AACSmLX7I525VjK9apoduAzRa?dl=0
[x] Experiment opening data set as a Stack in ImageJ
[x] Do some google searching to see if there are imagej based tools to do 3D spatial mapping with a Stack

mwatts15 commented 5 years ago

@slarson , can you provide some citation info on this data? We need a dataset for openworm/PyOpenWorm#408, and I would use something from the movement database, but I think it would be interesting to work with common data sets across projects this summer.

slarson commented 5 years ago

@mwatts15 -- No citation yet for this data as it is a purely experimental data set at the moment! Citation would come later.

EST09 commented 5 years ago

This paper seems to describe what we want to do? A 3D digital atlas of C. elegans and its application to single-cell analyses Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K Kim & Eugene Myers https://www.nature.com/articles/nmeth.1366

slarson commented 5 years ago

A 3D digital atlas of C. elegans and its application to single-cell analyses. - 2009.pdf