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openworm / OpenWorm

Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
http://openworm.org
MIT License
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'hoc.HocObject' object has no attribute 'a_MVL24' #352

Closed schzene closed 1 week ago

schzene commented 2 weeks ago

I noticed this warning when run the code:

'hoc.HocObject' object has no attribute 'a_MVL24'

Will this have any impact on the running results?

pgleeson commented 1 week ago

Thanks for reporting @schzene. No, this won't have any impact. There is no muscle MVL24 in the real C. elegans (see https://royalsocietypublishing.org/doi/10.1098/rstb.2017.0376, there are 4 quadrants of muscles, 3 have 24 muscles the ventral left one (MVL) has 23 -> 95 total). The neural network generated by c302 which powers Sibernetic in this case has the correct 95 muscles, with MVL24 missing. This code: https://github.com/openworm/sibernetic/blob/development/main_sim.py#L219 just catches the error and prints it out and continues if that muscle is not found: https://github.com/openworm/sibernetic/blob/development/main_sim.py#L219. I'll update the error message to make it clearer...

schzene commented 1 week ago

Thanks a lot for your reply!