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openworm / behavioral_syntax

behavioral syntax analysis based on the paper of Andre Brown
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Repo starting point? #13

Closed MichaelCurrie closed 8 years ago

MichaelCurrie commented 8 years ago

I tried using /demos/posture_sequence.py, and /tests/test2.py.

Is there another starting point I should be going to? Thanks!

ghost commented 8 years ago

Michael, the demo is going to contain the starting point but that's something I haven't been working on seriously yet. I was wondering whether I should use ipython notebooks as the final output of the analysis of different worm postures or pdf.

Two months ago I figured that pdf was a much more common format so I think I'll go ahead and use reportlab for the output of the demos.

MichaelCurrie commented 8 years ago

What I mean is, what is the top-level script I should be executing, or are there multiple top-level scripts? Thanks!

IPython notebooks are a great way to show final results, I agree.

ghost commented 8 years ago

Now I get you. There will be multiple top level scripts in the lab_reports module.

Here's the explanation of how that will work:

http://behavioral-syntax.readthedocs.org/en/latest/lab_reports.html

The documentation is incomplete but a lot more will be added by the end of this week.