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hodgkin_huxley_tutorial
A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
GNU Lesser General Public License v3.0
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Update to tests - tighter tolerances
#75
pgleeson
closed
4 months ago
0
Fix vclamp duration/dt issue
#74
pgleeson
closed
10 months ago
1
Issue70
#73
VahidGh
closed
10 months ago
2
Remove start time in HH python notebook?
#72
pgleeson
closed
10 months ago
0
Changing total simulation time not working in voltage clamp mode in HH Python notebook
#71
pgleeson
closed
10 months ago
0
Issue with multiple plot axes/ticks in HH jupyter notebook on matplotlib 3.8
#70
pgleeson
closed
10 months ago
2
Update README.md
#69
pgleeson
closed
10 months ago
0
Update year in footer; update GHA versions
#68
pgleeson
closed
11 months ago
0
Ignore arm64 dir
#67
pgleeson
closed
1 year ago
0
Test on 3.8 and 3.10
#66
pgleeson
closed
1 year ago
0
Option to show extra plots of driving force and m3h etc.
#65
pgleeson
closed
1 year ago
0
Add test on jnmlmoose
#64
pgleeson
closed
1 year ago
0
Add option to keep traces/overlay across simulation runs
#63
pgleeson
opened
1 year ago
0
Select plots
#62
pgleeson
closed
1 year ago
0
Feat/allow plot toggling
#61
sanjayankur31
closed
1 year ago
0
Add checkboxes to select which of 5 (or 7: #59) plots to show in HH notebook
#60
pgleeson
closed
1 year ago
1
Add 2 more plots to HH notebook: m3h + n4; driving force (Vm-Eion)
#59
pgleeson
closed
1 year ago
0
feat: use values from text boxes for simulation
#58
sanjayankur31
closed
1 year ago
0
Add note that current is in pA also...
#57
pgleeson
closed
1 year ago
1
Updated images, descriptions and parameters to match NEURON
#56
pgleeson
closed
1 year ago
0
Change injection current units to nA in Python notebook
#55
pgleeson
closed
1 year ago
1
Fewer time points in vclamp mode
#54
pgleeson
closed
1 year ago
0
HH python notebook crashes kernel on OSBv2
#53
pgleeson
closed
1 year ago
0
Adding OMV test on HH; conductance plots; simplify code in notebook
#52
pgleeson
closed
1 year ago
0
Ensure all x and y values printed at bottom of plots reflect x and y values in plot where pointer is located
#51
pgleeson
closed
1 year ago
1
Add 5th plot with conductances of Na and K
#50
pgleeson
closed
1 year ago
0
Notebook updates
#49
pgleeson
closed
1 year ago
0
Adding readmes and an image of the interactive notebook
#48
pgleeson
closed
1 year ago
0
Requirements file
#47
pgleeson
closed
1 year ago
0
Add instructions to run notebooks on OSBv2
#46
pgleeson
closed
1 year ago
1
Add link to run notebook(s) on Binder & Collab
#45
pgleeson
opened
1 year ago
1
Updated line numbers in `Tutorial.rst` for documentation (Fixes issue #40)
#44
irahulsonkar
closed
1 year ago
1
Jupyter Notebook for NeuroML model using `info` method
#43
irahulsonkar
closed
1 year ago
5
GSoC 2022 Submission
#42
irahulsonkar
closed
1 year ago
1
Add image of HH notebook on main README
#41
pgleeson
closed
1 year ago
1
Update line numbers
#40
pgleeson
closed
1 year ago
2
Vclamp Notebook minor updates
#39
irahulsonkar
closed
1 year ago
0
Updated notebooks & vclamp support in main python script
#38
pgleeson
closed
1 year ago
0
Notebook for HH model python version updated (issue #33)
#37
irahulsonkar
closed
1 year ago
3
bug fix: tab widget title
#36
irahulsonkar
closed
1 year ago
0
Extended HodgkinHuxley.py for voltage clamp mode (issue #32)
#35
irahulsonkar
closed
2 years ago
1
ET notebook updated
#34
irahulsonkar
closed
2 years ago
6
Update notebook for running voltage clamp simulations
#33
pgleeson
closed
1 year ago
2
Extend HodgkinHuxley.py for optionally running in voltage clamp mode
#32
pgleeson
closed
1 year ago
1
Neuro ml jupyter notebook
#31
irahulsonkar
closed
2 years ago
0
Notebook example with NML
#30
pgleeson
closed
2 years ago
0
NeuroML jupyter notebook (Issue #20)
#29
irahulsonkar
closed
2 years ago
1
Jupyter notebook with HH example & updated docs
#28
pgleeson
closed
2 years ago
0
Updated default injection current
#27
pgleeson
closed
2 years ago
0
test
#26
pgleeson
closed
2 years ago
0
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