search

openworm / hodgkin_huxley_tutorial

A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook
GNU Lesser General Public License v3.0
36 stars 9 forks source link

JNML Install tutorial #1

Closed joebowen closed 8 years ago

joebowen commented 9 years ago

Create JNML install tutorial.

slarson commented 9 years ago

cc: @wilzh40

wilzh40 commented 9 years ago

I just made a fresh install of ubuntu linux and fully upgraded everything. Could you please repost the travis.yml file you referenced? I remember installed it the hard way manually using the development branch, and compiling using maven.

joebowen commented 9 years ago

https://github.com/openworm/muscle_model/blob/master/.travis.yml

pgleeson commented 9 years ago

Ideally the instructions for installing jNeuroML should reside here: https://github.com/NeuroML/jNeuroML/blob/master/README.md. Happy for suggestions for additions to that if it's incomplete/unclear.

Alternatively if this issue relates to installing the environment for running the tests etc. related to the muscle model, then a link to the (commented) .travis.yml file above is the most appropriate, as locations for the utilities in BlueBrainProjectShowcase etc. will change and this script will be updated accordingly.

pgleeson commented 9 years ago

Simplest thing might be to bundle a copy of the jNeuroML jar with this repo? Latest is available here: http://sourceforge.net/p/neuroml/code/HEAD/tree/jNeuroMLJar/. It's ~18M, but with a local run.sh (and run.bat) pointing at it, it would mean no other installation requirements for running the NML2 version...

pgleeson commented 8 years ago

Fixed, as the jnml jar has been added to the repo