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openworm / movement_cloud

Movement Analysis on the cloud
http://movement.openworm.org/
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OpenWorm Validation Dashboard #83

Open MichaelCurrie opened 7 years ago

MichaelCurrie commented 7 years ago

Add a tab to the Django site that visualizes with d3.js the progression of the worm simulation tracks as it gets closer in parameter space to the cluster of 12,000+ worms in our database.

Notes from @aexbrown on this:

2-dimensional scatterplot speed, curvature

PCA on the angles is eigenworms

PCA (reduce to 3) PCA on the features

tennis racket principal axes hold a tennis

http://distill.pub/2016/misread-tsne/

More generally, being able to compare strains is what we want to be able to facilitate:

Relationship between strains then the averages

is my strain different from the wild-type reference?

clustering question --> given the average feature --> 300 average feature vectors

euclidean distance maholonobus distance

MichaelCurrie commented 7 years ago

This would be the place where we visualize the behavioural comparison data discussed here: https://github.com/openworm/openworm/issues/229