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openworm / muscle_model

Model of C elegans body wall muscle based on Boyle & Cohen 2008
http://www.opensourcebrain.org/projects/muscle_model
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Create iv_all.py #19

Closed VahidGh closed 9 years ago

slarson commented 9 years ago

@VahidGh How does this one relate to the other gist that we were looking at with the Calcium I/V plot?

VahidGh commented 9 years ago

This one includes both Ca and K(Kf + Ks) currents and also uses input.csv file which is being used in the main version of the model (the matlab version). Also this script uses all the time-based voltage values and their corresponding e, f, and h (de/dt, df/dt, and dh/dt), so includes the peak values (although I wrote another script based on the peak values, that generates the out-most curve in this plot) The aim of the script is to compare individual I-V curves in this model, with related channel curves from literature. With limited samples (e.g 11 voltage samples) it needs a little optimization to fit the final curves.

On Sat, Dec 27, 2014 at 12:58 AM, Stephen Larson notifications@github.com wrote:

@VahidGh https://github.com/VahidGh How does this one relate to the other gist that we were looking at with the Calcium I/V plot?

— Reply to this email directly or view it on GitHub https://github.com/openworm/muscle_model/pull/19#issuecomment-68158916.

slarson commented 9 years ago

Thanks!