Error when trying to use LEMS_Figure2B.xml with jNeuroML

[rayner]

When I try to run the following command, I get an error about a missing "simpleSeriesResistance" parameter for a voltage clamp component. I'm not sure where this is defined or where to add this - any chance you could advise?

The command and output are:

$ jnml LEMS_Figure2B.xml jNeuroML v0.5.1 Loading: /home/rayner/muscle_model/NeuroML2/LEMS_Figure2B.xml with jLEMS... org.lemsml.jlems.core.sim.ContentError: no value supplied for parameter: simpleSeriesResistance in Component(id=vClamp1 type=voltageClamp) Defined attributes: delay=5ms, duration=20ms, targetVoltage=-60mV, seriesResistance=1ohm, at org.lemsml.jlems.core.type.Component.resolve(Component.java:371) at org.lemsml.jlems.core.type.Component.resolve(Component.java:217) at org.lemsml.jlems.core.type.Component.checkResolve(Component.java:194) at org.lemsml.jlems.core.type.Lems.resolve(Lems.java:154) at org.lemsml.jlems.core.sim.LemsProcess.readModel(LemsProcess.java:82) at org.neuroml.export.Utils.readLemsNeuroMLFile(Utils.java:177) at org.neuroml.export.Utils.loadLemsFile(Utils.java:289) at org.neuroml.export.Utils.runLemsFile(Utils.java:284) at org.neuroml.JNeuroML.main(JNeuroML.java:204) INFO Jun 19,2014 18:40 (INFO) Reading from: /home/rayner/muscle_model/NeuroML2/LEMS_Figure2B.xml

Thanks for any help you can give!

[slarson]

cc @pgleeson

[rayner]

Oops, looks like you've already fixed this. I just checked out the latest version and it's working now. Sorry!

[pgleeson]

Yes, most of the latest functionality requires the development version. There should be a stable beta3 release of NeuroML in the next month, but for now it's best to regularly update jNeuroML, either with 'svn update' for the binary version or 'python getNeuroML.py' for the source install. https://github.com/NeuroML/jNeuroML/blob/master/README.md