openworm / org.geppetto

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
http://geppetto.org
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Release 0.1.8 #279

Closed tarelli closed 10 years ago

tarelli commented 10 years ago

@mlolson check the following

adrianq commented 10 years ago

Ok, I am checking what is wrong in the master branch because I was not having this problem locally. Let you know...

Another minor issue... config.json used to say: "sourcesdir": "Replace this by the path of your Geppetto sources folder" now: "sourcesdir":"/Users/mlolson/Projects/openworm/release"

tarelli commented 10 years ago

@adrianq I took down development, also c302.electrical.getModelTree() gives back the no model tree message, maybe something didnt get in the PR/merge?

adrianq commented 10 years ago

@tarelli Yes, I have realised about it as well.... Both of them should return a model tree. I will check...

adrianq commented 10 years ago

I am having some compilation problems in the simulation bundle regarding this library: import ucar.nc2.NetcdfFile Any idea? am I missing anything?

adrianq commented 10 years ago

Ok, solved after 100 mvn update project , mvn clean and mvn install...

adrianq commented 10 years ago

@mlolson I created the pull request for master instead of development which is not right, sorry for this, and now the development branch has an old version. Can you fix that? Thanks!

adrianq commented 10 years ago

@mlolson @tarelli The main problem in master (live version) is the pull request for the branch neuromlpopulation in bundle org.geppetto.model.neuroml has not been merged yet into master/development. See https://github.com/openworm/org.geppetto.model.neuroml/pull/33

mlolson commented 10 years ago

@tarelli 1 should be fixed, I can't reproduce 2, I can reproduce 3

mlolson commented 10 years ago

@adrianq I didn't notice they were against master and I merged then. That was my mistake. I then rebased development from master so the two branches are now identical. Sorry for any confusion.

I also opened a new pull request for model.neuroml from neuromlpopulation -> development, and merged that. So now development branch should be up to date, please test that branch.

When I follow the steps detailed by Matteo:

with the first hhcell sample running call G.addWidget(3); TreeVisualiserDAT1.setData(hhcell) all works so far. now call hhcell.electrical.getModelTree() and see errors in the console

I see an error in the console repeated many times and the application slows down. see: screen shot 2014-10-18 at 10 57 16 am

mlolson commented 10 years ago

@tarelli This may have had something to do with the clipboard issue, but I'm not entirely sure. It was causing a warning in my console.

adrianq commented 10 years ago

@mlolson I have just created two pull request for model.neuroml and frontend that should fix the js error for the treevisualiserdat widget

mlolson commented 10 years ago

@adrianq Problem solved, thanks!