Displaying multiple SWC files in geppetto

AdamRTomkins commented 8 years ago

I am trying to visualize two swc files simultaneously using geppetto. I am attempting to modify the Ganglion Cell from EyeWire example.

I am not sure on the format to include multiple swc files (15 and 56 in the zip file).

test.zip

tarelli commented 8 years ago

Hi @AdamRTomkins, can you try with the code below? You need to create two variables if you want to instantiate both SWCs. In the lines below you are adding types (as if you were defining your own classes), one for each SWC, in the variables entries you are saying "I want to instantiate them".

<?xml version="1.0" encoding="ASCII"?>
<gep:GeppettoModel
    xmi:version="2.0"
    xmlns:xmi="http://www.omg.org/XMI"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:gep="https://raw.githubusercontent.com/openworm/org.geppetto.model/master/src/main/resources/geppettoModel.ecore"
    xmlns:gep_1="https://raw.githubusercontent.com/openworm/org.geppetto.model/master/src/main/resources/geppettoModel.ecore#//types">
  <variables
      id="AutoGeneratedSWC56"
      name="AutoGenerated 56"
      types="//@libraries.0/@types.0"/>
  <variables
      id="AutoGeneratedSWC15"
      name="AutoGenerated 15"
      types="//@libraries.0/@types.1"/>
  <libraries
      id="swc"
      name="na">
    <types xsi:type="gep_1:ImportType"
        id="One"
        url="SERVER_ROOT/app_data/test/56.swc"
        modelInterpreterId="swcModelInterpreter"/>
    </libraries>
    <types xsi:type="gep_1:ImportType"
        id="Two"
        url="SERVER_ROOT/app_data/test/15.swc"
        modelInterpreterId="swcModelInterpreter"/>
    </libraries>
</gep:GeppettoModel>

AdamRTomkins commented 8 years ago

Thank you @tarelli For posterity, there was one further error in the code, with a duplication of the tag, and the first must be removed.

openworm / org.geppetto

Displaying multiple SWC files in geppetto #510