Refactor dockerimage files

Docker images should be refactored. Currently, containers are 3+ Gb in size which takes long time to pull into kubernetes and reduces node disk space, increasing response time.

Refactor would look somewhat like 👇

# org.geppetto/utilities/docker/geppetto/Dockerfile
FROM metacell/java-virgo-maven:development as build-geppetto
# { ... }

FROM  metacell/java-virgo-maven:development
COPY --from=build-geppetto /${SERVER_HOME}/repository/usr/*.war  /${SERVER_HOME}/repository/usr/*.war

And we have to remove this from https://github.com/MetaCell/java-virgo-maven/blob/development/Dockerfile

# Pre download Maven packages to speed up Geppetto builds
ENV \
  VERSION=development \
  GEPPETTO=https://github.com/openworm/org.geppetto.git \
  MODEL=https://github.com/openworm/org.geppetto.model.git \
  CORE=https://github.com/openworm/org.geppetto.core.git \
  NEUROML=https://github.com/openworm/org.geppetto.model.neuroml.git \
  SIM=https://github.com/openworm/org.geppetto.simulation.git \
  FRONTEND=https://github.com/openworm/org.geppetto.frontend.git \
  APP=https://github.com/openworm/geppetto-application.git \
  CLIENT=https://github.com/openworm/geppetto-client.git

RUN mkdir /tmp/delete
WORKDIR /tmp/delete

RUN \
  for i in ${GEPPETTO} ${MODEL} ${CORE} ${NEUROML} ${SIM} ${FRONTEND} ;\
  do \
    git clone -b ${VERSION} $i ;\
  done &&\
  cd org.geppetto.frontend/src/main &&\
  git clone -b ${VERSION} ${APP} webapp &&\
  cd webapp &&\
  git clone -b ${VERSION} ${CLIENT} &&\
  cd ../../../../org.geppetto &&\
  mvn -Dhttps.protocols=TLSv1.2 -Dmaven.test.skip install &&\
  cd ${HOME} &&\
  rm -rf /tmp/delete

We could also look deeper into https://github.com/MetaCell/java-virgo-maven/blob/development/Dockerfile and check what is actually needed inside there to run the geppetto server ones we have the war files and remove all the rest.

openworm / org.geppetto

Refactor dockerimage files #628