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openworm / owmeta

Unified, simple data access python library for data & facts about C. elegans anatomy
MIT License
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Make generating c302 from PyOpenWorm work in the OpenWorm Docker image #266

Open slarson opened 8 years ago

slarson commented 8 years ago

We currently have a start on a docker image that contains PyOpenWorm.

Inside that image is the dev version of the master_openworm.py script

The first step of this script is to generate c302 from the latest contents of PyOpenWorm.

We have previously made a few steps towards accomplishing this:

We need to consolidate progress on these from a code perspective, and move on to making this runnable by modifying the dev version of the master_openworm.py script and committing a new version of the docker image that has this working correctly.

pgleeson commented 8 years ago

As mentioned in the issues above, https://github.com/openworm/PyOpenWorm/issues/177 is the key to updating c302 to use PyOpenWorm...

perfortnight commented 8 years ago

November 29, 2015 9:43 AM

Conversation specifying more details about this ticket.

slarson commented 8 years ago

OK now that #177 is done, let's see if we can make more progress. @perfortnight ; any updates?

perfortnight commented 8 years ago

No. I've been away. But on that note, the docker image I have (openworm_test) does not appear to have the file structure that the https://github.com/openworm/OpenWorm/blob/development/master_openworm.py file expects. For example, there is no /home/openworm directory.

Is this the right docker image to be working with? Are there necessary installations to make before it is ready to work with? If so, are they documented somewhere?

slarson commented 8 years ago

@perfortnight ok try again; you are right; the image didn't seem to have that stuff. I have pushed a new version; this time it should work