Closed NHDaly closed 10 years ago
(gdb) bt
#0 0x00000001007ee987 in computeInteractionWithMembranes (position=0x101fd0000, velocity=0x0, sortedPosition=0x8, particleIndex=0x101d97000, particleIndexBack=<value temporarily unavailable, due to optimizations>, neighborMap=0x1037ee000, membraneData=0x0,
Looks like velocity and membraneData is null pointer could you check their values? For example put in first line printf("\n%f\n",membraneData[0]); in kernel computeInteractionWithMembranes.
:/ no dice.. Apparently membraneData is a null ptr...
computeInteractionWithMembranes (position=0x102455000, velocity=0x102b68000, sortedPosition=0x1024e0000, particleIndex=0x101597000, particleIndexBack=0x1015ba000, neighborMap=0x102000000, membraneData=0x0, numOfElasticP=218, r0=1.66999996) at clprogram.ZwwTiU.c:1367
1367 printf("\nNATHAN: %f\n",membraneData[0]);
(gdb) bt
#0 computeInteractionWithMembranes (position=0x102455000, velocity=0x102b68000, sortedPosition=0x1024e0000, particleIndex=0x101597000, particleIndexBack=0x1015ba000, neighborMap=0x102000000, membraneData=0x0, numOfElasticP=218, r0=1.66999996) at clprogram.ZwwTiU.c:1367
#1 0x00000001007efd9a in computeInteractionWithMembranes_wrapper () at clprogram.ZwwTiU.c:1744
#2 0x00007fff92b0ea65 in glrCompCloseDevice ()
#3 0x00007fff92bae8f8 in _dispatch_client_callout2 ()
#4 0x00007fff92bae849 in _dispatch_apply_invoke ()
#5 0x00007fff92ba72ad in _dispatch_client_callout ()
#6 0x00007fff92ba909e in _dispatch_root_queue_drain ()
#7 0x00007fff92baa193 in _dispatch_worker_thread2 ()
#8 0x00007fff8df23ef8 in _pthread_wqthread ()
#9 0x00007fff8df26fb9 in start_wqthread ()
Current language: auto; currently minimal
(gdb) print membraneData
$1 = (int *) 0x0
whoops.. didn't mean to close it.
One other thing that's different about my build: I'm using Macports's Python2.7... might that be a problem?
@NHDaly it's not related to your Mac. same thing is going on with my Linux setup.
Changing this
if((mdi=particleMembranesList[jd_source_particle*MAX_MEMBRANES_INCLUDING_SAME_PARTICLE+mli])>-1)
to this
mdi=particleMembranesList[jd_source_particle*MAX_MEMBRANES_INCLUDING_SAME_PARTICLE+mli];
if(mdi>-1)
Fixed the issue on Linux, but after that there are some cl kernel crashes. You could revert few commits back, but there are some other issues like leaking and/or exploding worm, memory leaks etc. At this point, IMHO, Sibernetic is unusable, and not only from the performance point of view.
Hi, sorry for late answer wasn't near to computer. I'v just checked Sibernetic (development branch) on Linux and Windows instance of my machine, looks like it works fine (One Idea I have is difference between a drivers). Unfortunately I haven't any chances to work on Mac. @NHDaly I've also created a branch for you where I add logger for checking of correct work of configuration loader. After initialization it push data about membranes to two files (it happens before start of OpenCL code so it should start before crashes) in ./logs/ folder membranes.txt and membranesIndexes.txt if it works fine so this file should be identical to file membranes.txt and particleMembraneIndex.txt respectively in ./configuration folder. Let me know about your results. Thanks.
Hi, still segfaulted... Here's the output:
Process: Smoothed-Particle-Hydrodynamics [13024]
Path: /Users/USER/Documents/*/Smoothed-Particle-Hydrodynamics
Identifier: Smoothed-Particle-Hydrodynamics
Version: 0
Code Type: X86-64 (Native)
Parent Process: bash [11211]
Responsible: iTerm [10893]
User ID: 504
Date/Time: 2014-05-07 20:44:45.876 -0400
OS Version: Mac OS X 10.9.2 (13C1021)
Report Version: 11
Anonymous UUID: 4229EAD9-AB58-8F12-000F-D7BEC459A5C1
Sleep/Wake UUID: 693E9E2E-ED56-458C-A6F4-9A3FBC1D4C0F
Crashed Thread: 5 Dispatch queue: com.apple.root.default-overcommit-priority
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000001f8
VM Regions Near 0x1f8:
-->
__TEXT 000000010c3be000-000000010c3dc000 [ 120K] r-x/rwx SM=COW /Users/USER/Documents/*
Thread 0:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff93934e6a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8e9b0fa7 pthread_workqueue_addthreads_np + 47
2 libdispatch.dylib 0x00007fff93635ba1 _dispatch_queue_wakeup_global_slow + 64
3 libdispatch.dylib 0x00007fff93635217 _dispatch_wakeup + 117
4 libdispatch.dylib 0x00007fff936357a8 _dispatch_queue_push_list_slow2 + 30
5 com.apple.opencl 0x00007fff91359003 0x7fff91336000 + 143363
6 com.apple.opencl 0x00007fff91354bb9 0x7fff91336000 + 125881
7 com.apple.opencl 0x00007fff91352b55 clEnqueueNDRangeKernel + 166
8 Smoothed-Particle-Hydrodynamics 0x000000010c3cea3c cl::CommandQueue::enqueueNDRangeKernel(cl::Kernel const&, cl::NDRange const&, cl::NDRange const&, cl::NDRange const&, std::__1::vector<cl::Event, std::__1::allocator<cl::Event> > const*, cl::Event*) const + 220
9 Smoothed-Particle-Hydrodynamics 0x000000010c3cd3b0 owOpenCLSolver::_run_computeInteractionWithMembranes() + 496
10 Smoothed-Particle-Hydrodynamics 0x000000010c3d0f05 owPhysicsFluidSimulator::simulationStep(bool) + 309
11 Smoothed-Particle-Hydrodynamics 0x000000010c3d3b2a Timer(int) + 90
12 com.apple.glut 0x000000010c5f6350 __glutTimerCallBack + 45
13 com.apple.CoreFoundation 0x00007fff8fa8c494 __CFRUNLOOP_IS_CALLING_OUT_TO_A_TIMER_CALLBACK_FUNCTION__ + 20
14 com.apple.CoreFoundation 0x00007fff8fa8bfcf __CFRunLoopDoTimer + 1151
15 com.apple.CoreFoundation 0x00007fff8fafd5aa __CFRunLoopDoTimers + 298
16 com.apple.CoreFoundation 0x00007fff8fa47755 __CFRunLoopRun + 1525
17 com.apple.CoreFoundation 0x00007fff8fa46f25 CFRunLoopRunSpecific + 309
18 com.apple.HIToolbox 0x00007fff8c6bda0d RunCurrentEventLoopInMode + 226
19 com.apple.HIToolbox 0x00007fff8c6bd685 ReceiveNextEventCommon + 173
20 com.apple.HIToolbox 0x00007fff8c6bd5bc _BlockUntilNextEventMatchingListInModeWithFilter + 65
21 com.apple.AppKit 0x00007fff8d1f03de _DPSNextEvent + 1434
22 com.apple.AppKit 0x00007fff8d1efa2b -[NSApplication nextEventMatchingMask:untilDate:inMode:dequeue:] + 122
23 com.apple.glut 0x000000010c5e9552 -[GLUTApplication _runMainLoopUntilDate:autoreleasePool:] + 65
24 com.apple.glut 0x000000010c5e970a -[GLUTApplication run] + 264
25 com.apple.glut 0x000000010c5f5ead glutMainLoop + 260
26 Smoothed-Particle-Hydrodynamics 0x000000010c3d3fb5 run(int, char**, bool, bool) + 549
27 Smoothed-Particle-Hydrodynamics 0x000000010c3bfcc3 main + 259
28 libdyld.dylib 0x00007fff92c4d5fd start + 1
Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff93935662 kevent64 + 10
1 libdispatch.dylib 0x00007fff9363643d _dispatch_mgr_invoke + 239
2 libdispatch.dylib 0x00007fff93636152 _dispatch_mgr_thread + 52
Thread 2:: Dispatch queue: com.apple.opengl.cvmDoWork
0 libsystem_kernel.dylib 0x00007fff93930a56 semaphore_wait_trap + 10
1 libdispatch.dylib 0x00007fff93638a15 _dispatch_semaphore_wait_slow + 206
2 libxpc.dylib 0x00007fff946727ef xpc_connection_send_message_with_reply_sync + 195
3 libCoreVMClient.dylib 0x00007fff9012e06b cvms_element_build_and_get_internal + 232
4 libCoreVMClient.dylib 0x00007fff9012df7d cvms_element_build_from_source + 30
5 libCVMSPluginSupport.dylib 0x00007fff97d81340 cvm_deferred_build_modular(void*) + 421
6 libdispatch.dylib 0x00007fff936342ad _dispatch_client_callout + 8
7 libdispatch.dylib 0x00007fff9363668f _dispatch_queue_drain + 451
8 libdispatch.dylib 0x00007fff936379dd _dispatch_queue_invoke + 110
9 libdispatch.dylib 0x00007fff93635fa3 _dispatch_root_queue_drain + 75
10 libdispatch.dylib 0x00007fff93637193 _dispatch_worker_thread2 + 40
11 libsystem_pthread.dylib 0x00007fff8e9b0ef8 _pthread_wqthread + 314
12 libsystem_pthread.dylib 0x00007fff8e9b3fb9 start_wqthread + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff93934e6a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8e9b0f08 _pthread_wqthread + 330
2 libsystem_pthread.dylib 0x00007fff8e9b3fb9 start_wqthread + 13
Thread 4:
0 libsystem_kernel.dylib 0x00007fff93934e6a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff8e9b0f08 _pthread_wqthread + 330
2 libsystem_pthread.dylib 0x00007fff8e9b3fb9 start_wqthread + 13
Thread 5 Crashed:: Dispatch queue: com.apple.root.default-overcommit-priority
0 cl_kernels 0x000000010c9ac987 computeInteractionWithMembranes + 375 (clprogram.0bOi7h.c:1429)
1 cl_kernels 0x000000010c9addaa computeInteractionWithMembranes_wrapper + 186
2 libcldcpuengine.dylib 0x00007fff9359ba65 0x7fff93597000 + 19045
3 libdispatch.dylib 0x00007fff9363b8f8 _dispatch_client_callout2 + 8
4 libdispatch.dylib 0x00007fff9363b849 _dispatch_apply_invoke + 87
5 libdispatch.dylib 0x00007fff9363b77a dispatch_apply_f + 603
6 libcldcpuengine.dylib 0x00007fff9359c098 0x7fff93597000 + 20632
7 libdispatch.dylib 0x00007fff936342ad _dispatch_client_callout + 8
8 libdispatch.dylib 0x00007fff9363668f _dispatch_queue_drain + 451
9 libdispatch.dylib 0x00007fff936379dd _dispatch_queue_invoke + 110
10 libdispatch.dylib 0x00007fff93635fa3 _dispatch_root_queue_drain + 75
11 libdispatch.dylib 0x00007fff93637193 _dispatch_worker_thread2 + 40
12 libsystem_pthread.dylib 0x00007fff8e9b0ef8 _pthread_wqthread + 314
13 libsystem_pthread.dylib 0x00007fff8e9b3fb9 start_wqthread + 13
Thread 5 crashed with X86 Thread State (64-bit):
rax: 0x00000000000001f8 rbx: 0x000000010e156000 rcx: 0x0000000000000000 rdx: 0x0000000000000008
rdi: 0x00000001115e8a50 rsi: 0x0000000000000000 rbp: 0x00000001115e8ab0 rsp: 0x00000001115e8760
r8: 0x000000010c9eb000 r9: 0x000000010cf53000 r10: 0x00007fff990878bf r11: 0x00007fff8c952f10
r12: 0x00000001115e8880 r13: 0x0000000000000000 r14: 0x0000000000000000 r15: 0x000000010e156dc0
rip: 0x000000010c9ac987 rfl: 0x0000000000010246 cr2: 0x00000000000001f8
Logical CPU: 0
Error Code: 0x00000004
Trap Number: 14
Binary Images:
0x10c3be000 - 0x10c3dbfff +Smoothed-Particle-Hydrodynamics (0) <EFCAE42F-3348-339B-A47B-092FF919F153> /Users/USER/Documents/*/Smoothed-Particle-Hydrodynamics
0x10c3f5000 - 0x10c50bff7 +org.python.python (2.7.6, [c] 2004-2013 Python Software Foundation. - 2.7.6) <5DDD8EA5-9E4F-3614-8DD0-7FDADD75DFF3> /opt/local/Library/Frameworks/Python.framework/Versions/2.7/Python
0x10c5da000 - 0x10c61aff7 com.apple.glut (3.6.0 - GLUT-3.6.0) <87683C90-4303-3561-9CC8-5772FDEC16F0> /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT
0x10c96c000 - 0x10c977fff libGPUSupport.dylib (9.6) <039FC0EF-1B2C-3465-907B-A1856DCF5ADF> /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupport.dylib
0x10c9aa000 - 0x10c9afff7 +cl_kernels (???) <08E10E92-A356-42F9-9E47-CA13C9108261> cl_kernels
0x10d968000 - 0x10e0b2ff7 libclh.dylib (4.0.3 - 4.0.3) <5FAE3A43-C0DC-340F-B94A-2E3E2A767619> /System/Library/Extensions/GeForceTeslaGLDriver.bundle/Contents/MacOS/libclh.dylib
0x1102f4000 - 0x1102fcff3 libCGCMS.A.dylib (599.21.1) <84C6C6F3-AD75-3120-A86F-8AE1005A0ECE> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGCMS.A.dylib
0x1103b6000 - 0x1103deffb libRIP.A.dylib (599.21.1) <994C1D46-A532-3361-8C20-11778DC12040> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x110c15000 - 0x110c18ffa libCGXType.A.dylib (599.21.1) <0F364FEE-105D-329D-B823-082AA45E6AFD> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.dylib
0x123440000000 - 0x12344086dfff com.apple.GeForceTeslaGLDriver (8.24.11 - 8.2.4) <AA787258-3655-3558-AC34-C5834A007A39> /System/Library/Extensions/GeForceTeslaGLDriver.bundle/Contents/MacOS/GeForceTeslaGLDriver
0x7fff6a4a9000 - 0x7fff6a4dc817 dyld (239.4) <2B17750C-ED1B-3060-B64E-21897D08B28B> /usr/lib/dyld
0x7fff8b243000 - 0x7fff8b24efff libGL.dylib (9.6) <A2EF4E15-EA08-396D-A1D4-29E1CED6876A> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff8b24f000 - 0x7fff8b24ffff com.apple.Accelerate (1.9 - Accelerate 1.9) <509BB27A-AE62-366D-86D8-0B06D217CF56> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff8b250000 - 0x7fff8b250fff com.apple.CoreServices (59 - 59) <7A697B5E-F179-30DF-93F2-8B503CEEEFD5> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x7fff8b251000 - 0x7fff8b260ff8 com.apple.LangAnalysis (1.7.0 - 1.7.0) <8FE131B6-1180-3892-98F5-C9C9B79072D4> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff8b298000 - 0x7fff8b298fff com.apple.Accelerate.vecLib (3.9 - vecLib 3.9) <F8D0CC77-98AC-3B58-9FE6-0C25421827B6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff8b299000 - 0x7fff8b306fff com.apple.SearchKit (1.4.0 - 1.4.0) <B9B8D510-A27E-36B0-93E9-17146D9E9045> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x7fff8b307000 - 0x7fff8b309ff7 com.apple.securityhi (9.0 - 55005) <405E2BC6-2B6F-3B6B-B48E-2FD39214F052> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff8b34f000 - 0x7fff8b362ff7 com.apple.AppContainer (3.0 - 1) <BD342039-430E-39FE-BC2D-8F97B557548E> /System/Library/PrivateFrameworks/AppContainer.framework/Versions/A/AppContainer
0x7fff8b367000 - 0x7fff8b373ff3 com.apple.AppleFSCompression (56 - 1.0) <5652B0D0-EB08-381F-B23A-6DCF96991FB5> /System/Library/PrivateFrameworks/AppleFSCompression.framework/Versions/A/AppleFSCompression
0x7fff8b374000 - 0x7fff8b3e7fff com.apple.securityfoundation (6.0 - 55122.1) <1939DE0B-BC38-3E50-8A8C-3471C8AC4CD6> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation
0x7fff8b3e8000 - 0x7fff8b3faff7 com.apple.MultitouchSupport.framework (245.13 - 245.13) <D5E7416D-45AB-3690-86C6-CC4B5FCEA2D2> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff8b3fb000 - 0x7fff8b402ff3 libcopyfile.dylib (103) <5A881779-D0D6-3029-B371-E3021C2DDA5E> /usr/lib/system/libcopyfile.dylib
0x7fff8b403000 - 0x7fff8b4e2fff libcrypto.0.9.8.dylib (50) <B95B9DBA-39D3-3EEF-AF43-44608B28894E> /usr/lib/libcrypto.0.9.8.dylib
0x7fff8b5e3000 - 0x7fff8b60bffb libxslt.1.dylib (13) <C9794936-633C-3F0C-9E71-30190B9B41C1> /usr/lib/libxslt.1.dylib
0x7fff8b636000 - 0x7fff8b69bffb com.apple.Heimdal (4.0 - 2.0) <1560A2CC-2C0C-3F7B-868C-BD5ADB241F5A> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
0x7fff8b948000 - 0x7fff8b95efff com.apple.CoreMediaAuthoring (2.2 - 947) <B01FBACC-DDD5-30A8-BCCF-57CE24ABA329> /System/Library/PrivateFrameworks/CoreMediaAuthoring.framework/Versions/A/CoreMediaAuthoring
0x7fff8b95f000 - 0x7fff8b962ffc com.apple.IOSurface (91 - 91) <07CA8A59-1E32-3FB6-B506-18DAF58A8CE0> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
0x7fff8b963000 - 0x7fff8b967ff7 libsystem_stats.dylib (93.90.3) <1A55AF8A-B6C4-3163-B557-3AD25DA643A8> /usr/lib/system/libsystem_stats.dylib
0x7fff8b968000 - 0x7fff8b969ff7 libDiagnosticMessagesClient.dylib (100) <4CDB0F7B-C0AF-3424-BC39-495696F0DB1E> /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff8b98f000 - 0x7fff8b9a0ff7 libsystem_asl.dylib (217.1.4) <655FB343-52CF-3E2F-B14D-BEBF5AAEF94D> /usr/lib/system/libsystem_asl.dylib
0x7fff8b9a1000 - 0x7fff8b9a2ff7 libsystem_sandbox.dylib (278.11) <5E5A6E09-33A9-391A-AB34-E57D93BB1551> /usr/lib/system/libsystem_sandbox.dylib
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0x7fff8baef000 - 0x7fff8baf0fff com.apple.TrustEvaluationAgent (2.0 - 25) <334A82F4-4AE4-3719-A511-86D0B0723E2B> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff8baf1000 - 0x7fff8baf5fff libpam.2.dylib (20) <B93CE8F5-DAA8-30A1-B1F6-F890509513CB> /usr/lib/libpam.2.dylib
0x7fff8baf6000 - 0x7fff8bb25ff9 com.apple.GSS (4.0 - 2.0) <1B71A3E1-E31D-32CC-A733-ED155CC4A6A2> /System/Library/Frameworks/GSS.framework/Versions/A/GSS
0x7fff8bb26000 - 0x7fff8bb73ff2 com.apple.print.framework.PrintCore (9.0 - 428) <8D8253E3-302F-3DB2-9C5C-572CB974E8B3> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
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0x7fff8bc67000 - 0x7fff8c09affb com.apple.vision.FaceCore (3.0.0 - 3.0.0) <F42BFC9C-0B16-35EF-9A07-91B7FDAB7FC5> /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
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0x7fff8c0e1000 - 0x7fff8c0e9ff7 com.apple.speech.recognition.framework (4.2.4 - 4.2.4) <98BBB3E4-6239-3EF1-90B2-84EA0D3B8D61> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x7fff8c169000 - 0x7fff8c16eff7 com.apple.MediaAccessibility (1.0 - 43) <D309D83D-5FAE-37A4-85ED-FFBDA8B66B82> /System/Library/Frameworks/MediaAccessibility.framework/Versions/A/MediaAccessibility
0x7fff8c626000 - 0x7fff8c64ffff com.apple.DictionaryServices (1.2 - 208) <A539A058-BA57-35EE-AA08-D0B0E835127D> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x7fff8c68f000 - 0x7fff8c939ff5 com.apple.HIToolbox (2.1 - 697.4) <DF5635DD-C255-3A8E-8B49-F6D2FB61FF95> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
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0x7fff8c94e000 - 0x7fff8c954ff7 libsystem_platform.dylib (24.90.1) <3C3D3DA8-32B9-3243-98EC-D89B9A1670B3> /usr/lib/system/libsystem_platform.dylib
0x7fff8c955000 - 0x7fff8cac3ff7 libBLAS.dylib (1094.5) <DE93A590-5FA5-32A2-A16C-5D7D7361769F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff8cac4000 - 0x7fff8cad2fff com.apple.opengl (9.6.0 - 9.6.0) <709F4A02-73A0-303C-86B5-85C596C8B707> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
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0x7fff9391f000 - 0x7fff9393bff7 libsystem_kernel.dylib (2422.92.1) <3F649963-7FA1-3201-8FF6-8438A52B9973> /usr/lib/system/libsystem_kernel.dylib
0x7fff93d8a000 - 0x7fff93e16ff7 com.apple.ink.framework (10.9 - 207) <8A50B893-AD03-3826-8555-A54FEAF08F47> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff93e17000 - 0x7fff93e2fff7 com.apple.openscripting (1.4 - 157) <B3B037D7-1019-31E6-9D17-08E699AF3701> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff93e30000 - 0x7fff93e68ff7 com.apple.RemoteViewServices (2.0 - 94) <3F34D630-3DDB-3411-BC28-A56A9B55EBDA> /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff9441d000 - 0x7fff94504ff7 libxml2.2.dylib (26) <A1DADD11-89E5-3DE4-8802-07186225967F> /usr/lib/libxml2.2.dylib
0x7fff94505000 - 0x7fff94505ffd com.apple.audio.units.AudioUnit (1.10 - 1.10) <486A97CD-C1F7-324D-87BC-B07F7A415B68> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff94506000 - 0x7fff94569ff7 com.apple.SystemConfiguration (1.13 - 1.13) <63B985ED-E7E4-3095-8D12-63C9F1DB0F3D> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x7fff94571000 - 0x7fff94579ffc libGFXShared.dylib (9.6) <E276D384-3616-3511-B5F2-92621D6372D6> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff94583000 - 0x7fff94667fff com.apple.coreui (2.1 - 231) <432DB40C-6B7E-39C8-9FB5-B95917930056> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x7fff94668000 - 0x7fff9468cfff libxpc.dylib (300.90.2) <AB40CD57-F454-3FD4-B415-63B3C0D5C624> /usr/lib/system/libxpc.dylib
0x7fff946c7000 - 0x7fff94b15fff com.apple.VideoToolbox (1.0 - 1273.49) <27177077-9107-3E06-ADAD-92B80E80CDCD> /System/Library/Frameworks/VideoToolbox.framework/Versions/A/VideoToolbox
0x7fff94b6e000 - 0x7fff94badfff libGLU.dylib (9.6) <EE4907CA-219C-34BD-A84E-B85695F64C05> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff94bae000 - 0x7fff94bb0ffb libutil.dylib (34) <DAC4A6CF-A1BB-3874-9569-A919316D30E8> /usr/lib/libutil.dylib
0x7fff94bb1000 - 0x7fff94c09ff7 com.apple.Symbolication (1.4 - 129) <16D42516-7B5E-357C-898A-FAA9EE7642B3> /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff94c0a000 - 0x7fff94c48ff7 libGLImage.dylib (9.6) <DCF2E131-A65E-33B2-B32D-28FF01605AB1> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff94c49000 - 0x7fff94c78fff com.apple.DebugSymbols (106 - 106) <E1BDED08-523A-36F4-B2DA-9D5C712F0AC7> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
0x7fff94c79000 - 0x7fff94c7efff com.apple.DiskArbitration (2.6 - 2.6) <A4165553-770E-3D27-B217-01FC1F852B87> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x7fff94c81000 - 0x7fff94f6bfff com.apple.CoreServices.CarbonCore (1077.17 - 1077.17) <3A2E92FD-DEE2-3D45-9619-11500801A61C> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff94f6c000 - 0x7fff94f72fff com.apple.AOSNotification (1.7.0 - 760.3) <7901B867-60F7-3645-BB3E-18C51A6FBCC6> /System/Library/PrivateFrameworks/AOSNotification.framework/Versions/A/AOSNotification
0x7fff94f88000 - 0x7fff94facff7 libJPEG.dylib (1042.2) <0AFE20D1-F24D-3548-A562-DB8FA7995655> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x7fff94fad000 - 0x7fff94fb6ff3 libsystem_notify.dylib (121) <52571EC3-6894-37E4-946E-064B021ED44E> /usr/lib/system/libsystem_notify.dylib
0x7fff94fb7000 - 0x7fff94fc7fff libbsm.0.dylib (33) <2CAC00A2-1352-302A-88FA-C567D4D69179> /usr/lib/libbsm.0.dylib
0x7fff94ff1000 - 0x7fff94ff9fff libsystem_dnssd.dylib (522.90.2) <A0B7CF19-D9F2-33D4-8107-A62184C9066E> /usr/lib/system/libsystem_dnssd.dylib
0x7fff94ffa000 - 0x7fff95083fff com.apple.ColorSync (4.9.0 - 4.9.0) <B756B908-9AD1-3F5D-83F9-7A0B068387D2> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff953e5000 - 0x7fff9544fff7 com.apple.framework.IOKit (2.0.1 - 907.90.2) <A779DE46-BB7E-36FD-9348-694F9B09718F> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff95642000 - 0x7fff95669ff7 libsystem_network.dylib (241.3) <8B1E1F1D-A5CC-3BAE-8B1E-ABC84337A364> /usr/lib/system/libsystem_network.dylib
0x7fff9581e000 - 0x7fff95821fff com.apple.help (1.3.3 - 46) <AE763646-D07A-3F9A-ACD4-F5CBD734EE36> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff9588f000 - 0x7fff958dcfff com.apple.AppleVAFramework (5.0.27 - 5.0.27) <D01B7D87-4BDC-3E48-A79B-951D05075F9D> /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
0x7fff958dd000 - 0x7fff959e3fff com.apple.ImageIO.framework (3.3.0 - 1042) <DEA4FF1B-D340-32C3-977D-D249709C6031> /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x7fff95a6f000 - 0x7fff95a79ff7 com.apple.bsd.ServiceManagement (2.0 - 2.0) <2D27B498-BB9C-3D88-B05A-76908A8A26F3> /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
0x7fff95a7a000 - 0x7fff95b64fff libsqlite3.dylib (158) <00269BF9-43BE-39E0-9C85-24585B9923C8> /usr/lib/libsqlite3.dylib
0x7fff95b65000 - 0x7fff95b65ffd libOpenScriptingUtil.dylib (157) <19F0E769-0989-3062-9AFB-8976E90E9759> /usr/lib/libOpenScriptingUtil.dylib
0x7fff95bc4000 - 0x7fff95bc4fff com.apple.Cocoa (6.8 - 20) <E90E99D7-A425-3301-A025-D9E0CD11918E> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff95c7b000 - 0x7fff9605cffe libLAPACK.dylib (1094.5) <7E7A9B8D-1638-3914-BAE0-663B69865986> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x7fff96fdd000 - 0x7fff96fe4fff libcompiler_rt.dylib (35) <4CD916B2-1B17-362A-B403-EF24A1DAC141> /usr/lib/system/libcompiler_rt.dylib
0x7fff96fe5000 - 0x7fff9714bfff libGLProgrammability.dylib (9.6) <8807FAD2-11E2-3293-89D8-397B87334138> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff9714c000 - 0x7fff97175fff GLRendererFloat (9.6) <16871296-2EB9-3FF6-AB00-3E2E55A45A63> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff97aa1000 - 0x7fff97b21fff com.apple.CoreSymbolication (3.0 - 141) <B018335C-698B-3F87-AF1C-6115C4FA8954> /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolication
0x7fff97b22000 - 0x7fff97b23ff7 libsystem_blocks.dylib (63) <FB856CD1-2AEA-3907-8E9B-1E54B6827F82> /usr/lib/system/libsystem_blocks.dylib
0x7fff97b66000 - 0x7fff97b81ff7 libCRFSuite.dylib (34) <FFAE75FA-C54E-398B-AA97-18164CD9789D> /usr/lib/libCRFSuite.dylib
0x7fff97b8c000 - 0x7fff97cbbfef com.apple.MediaControlSender (2.0 - 200.34.4) <FC24EC8D-2E46-3F76-AF63-749F30857B96> /System/Library/PrivateFrameworks/MediaControlSender.framework/Versions/A/MediaControlSender
0x7fff97cbc000 - 0x7fff97cc6ff7 com.apple.AppSandbox (3.0 - 1) <9F27DC25-C566-3AEF-92D3-DCFE7836916D> /System/Library/PrivateFrameworks/AppSandbox.framework/Versions/A/AppSandbox
0x7fff97cef000 - 0x7fff97cf9ff7 com.apple.CrashReporterSupport (10.9 - 538) <B487466B-3AA1-3854-A808-A61F049FA794> /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
0x7fff97d14000 - 0x7fff97d7bff7 com.apple.CoreUtils (2.0 - 200.34.4) <E53B97FE-E067-33F6-A9C1-D4EC2A20FB9F> /System/Library/PrivateFrameworks/CoreUtils.framework/Versions/A/CoreUtils
0x7fff97d7f000 - 0x7fff97d81fff libCVMSPluginSupport.dylib (9.6) <FFDA2811-060E-3591-A280-4A726AA82436> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff97d82000 - 0x7fff97daefff com.apple.CoreServicesInternal (184.9 - 184.9) <4DEA54F9-81D6-3EDB-AA3C-1F9C497B3379> /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal
0x7fff97daf000 - 0x7fff97f3cff7 GLEngine (9.6) <51D58F76-B9B3-3B4F-B65A-F6D213C2EED7> /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff97f40000 - 0x7fff97f49fff com.apple.speech.synthesis.framework (4.7.1 - 4.7.1) <383FB557-E88E-3239-82B8-15F9F885B702> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x7fff97f4a000 - 0x7fff97f55fff libkxld.dylib (2422.92.1) <A7DFFC8C-45EE-3525-A961-EF93C2FB1340> /usr/lib/system/libkxld.dylib
0x7fff97f56000 - 0x7fff9801ffff com.apple.LaunchServices (572.26 - 572.26) <EF8A4A15-0861-35C5-9744-5E1BC5C26DD9> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x7fff98544000 - 0x7fff9855bff7 com.apple.CFOpenDirectory (10.9 - 173.90.1) <38A25261-C622-3F11-BFD3-7AFFC44D57B8> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
0x7fff9855c000 - 0x7fff9856efff com.apple.ImageCapture (9.0 - 9.0) <BE0B65DA-3031-359B-8BBA-B9803D4ADBF4> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff985cf000 - 0x7fff985d7ff7 com.apple.AppleSRP (5.0 - 1) <ABC7F088-1FD5-3768-B9F3-847F355E90B3> /System/Library/PrivateFrameworks/AppleSRP.framework/Versions/A/AppleSRP
0x7fff9886a000 - 0x7fff988d0fff com.apple.framework.CoreWiFi (2.0 - 200.21.1) <5491896D-78C5-30B6-96E9-D8DDECF3BE73> /System/Library/Frameworks/CoreWiFi.framework/Versions/A/CoreWiFi
0x7fff988d1000 - 0x7fff989bffff libJP2.dylib (1042.2) <DD2DE799-C053-3C6A-91EC-D637CBD6FF90> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
0x7fff98a97000 - 0x7fff98aa4fff com.apple.Sharing (132.2 - 132.2) <F983394A-226D-3244-B511-FA51FDB6ADDA> /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff98d49000 - 0x7fff98d64ff7 libsystem_malloc.dylib (23.10.1) <A695B4E4-38E9-332E-A772-29D31E3F1385> /usr/lib/system/libsystem_malloc.dylib
0x7fff98d65000 - 0x7fff98d95fff com.apple.IconServices (25 - 25.17) <4751127E-FBD5-3ED5-8510-08D4E4166EFE> /System/Library/PrivateFrameworks/IconServices.framework/Versions/A/IconServices
0x7fff98d96000 - 0x7fff98db3ff7 com.apple.framework.Apple80211 (9.3.1 - 931.58) <D5B2DD15-3DCC-31F6-9320-3A20A887C5D5> /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff98db4000 - 0x7fff98dbcfff libMatch.1.dylib (19) <021293AB-407D-309A-87F5-8E782F46753E> /usr/lib/libMatch.1.dylib
0x7fff98dbd000 - 0x7fff98e21fff com.apple.datadetectorscore (5.0 - 354.3) <B92E87D1-2045-3AB2-AE3F-8F948B30518A> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 31752
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=198.6M resident=73.5M(37%) swapped_out_or_unallocated=125.1M(63%)
Writable regions: Total=87.0M written=9280K(10%) resident=21.2M(24%) swapped_out=4K(0%) unallocated=65.8M(76%)
REGION TYPE VIRTUAL
=========== =======
CG backing stores 3096K
CG image 4K
CG raster data 12K
CG shared images 180K
Dispatch continuations 4096K
IOKit 7420K
IOKit (reserved) 4K reserved VM address space (unallocated)
Kernel Alloc Once 8K
MALLOC 37.6M
MALLOC (admin) 32K
MALLOC_LARGE (reserved) 280K reserved VM address space (unallocated)
OpenCL 7956K
STACK GUARD 56.0M
Stack 10.1M
VM_ALLOCATE 16.3M
__DATA 41.2M
__IMAGE 528K
__LINKEDIT 66.9M
__TEXT 131.7M
__UNICODE 544K
mapped file 50.4M
shared memory 68K
=========== =======
TOTAL 433.9M
TOTAL, minus reserved VM space 433.6M
Model: MacBookPro5,5, BootROM MBP55.00AC.B03, 2 processors, Intel Core 2 Duo, 2.26 GHz, 8 GB, SMC 1.47f2
Graphics: NVIDIA GeForce 9400M, NVIDIA GeForce 9400M, PCI, 256 MB
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1067 MHz, 0x857F, 0x483634353155363446373036364700000000
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1067 MHz, 0x857F, 0x483634353155363446373036364700000000
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8D), Broadcom BCM43xx 1.0 (5.106.98.100.22)
Bluetooth: Version 4.2.3f10 13477, 3 services, 15 devices, 1 incoming serial ports
Network Service: AirPort, AirPort, en1
Network Service: Diad, Ethernet, en0
Serial ATA Device: ST750LX003-1AC154, 750.16 GB
Serial ATA Device: HL-DT-ST DVDRW GS23N
USB Device: Internal Memory Card Reader
USB Device: Built-in iSight
USB Device: USB Receiver
USB Device: BRCM2046 Hub
USB Device: Bluetooth USB Host Controller
USB Device: Apple Internal Keyboard / Trackpad
USB Device: IR Receiver
Thunderbolt Bus:
(gdb) bt
#0 0x00000001007ee987 in computeInteractionWithMembranes (position=0x101e9c000, velocity=0x0, sortedPosition=0x8, particleIndex=0x101e67000, particleIndexBack=<value temporarily unavailable, due to optimizations>, neighborMap=0x1037ee000, membraneData=0x0, numOfElasticP=218, r0=1.66999996) at clprogram.MDdjC9.c:1429
#1 0x00000001007efdaa in computeInteractionWithMembranes_wrapper () at clprogram.MDdjC9.c:1741
#2 0x00007fff9359ba65 in glrCompCloseDevice ()
#3 0x00007fff9363b8f8 in _dispatch_client_callout2 ()
#4 0x00007fff9363b849 in _dispatch_apply_invoke ()
#5 0x00007fff9363b77a in dispatch_apply_f ()
#6 0x00007fff9359c098 in glrCompExecuteKernel ()
#7 0x00007fff936342ad in _dispatch_client_callout ()
#8 0x00007fff9363668f in _dispatch_queue_drain ()
#9 0x00007fff936379dd in _dispatch_queue_invoke ()
#10 0x00007fff93635fa3 in _dispatch_root_queue_drain ()
#11 0x00007fff93637193 in _dispatch_worker_thread2 ()
#12 0x00007fff8e9b0ef8 in _pthread_wqthread ()
#13 0x00007fff8e9b3fb9 in start_wqthread ()
Current language: auto; currently minimal
(gdb)
(gdb) list
1424 // about participation in membrane composition
1425 // Let's get it - check corresponding position of particleMembranesList (if it is non-empty)
1426 for(int mli=0;mli<MAX_MEMBRANES_INCLUDING_SAME_PARTICLE;mli++)
1427 {//search through the list of elementary triangular membranes at least one corner of which is current neighbor particle
1428 //22222222222222222222222222222222222222222222222222222222222222222222222222222222222
1429 if((mdi=particleMembranesList[jd_source_particle*MAX_MEMBRANES_INCLUDING_SAME_PARTICLE+mli])>-1)
1430 {
1431 i = membraneData[mdi*3+0];
1432 j = membraneData[mdi*3+1];
1433 k = membraneData[mdi*3+2];
(gdb)
@NHDaly Have you had a chance to try my suggested fix?
Hi @NHDaly. Did you compare the files membranes.txt and membranesIndexes.txt from ./log folder with particleMembraneIndex.txt respectively in ./configuration folder. If yes are they equal:)? Also I commit to debugOnMac branch last updates for you I added directive for precompilers which turn off membrane handling routins. Could you please try check it does it work or not?
Hi @skhayrulin, sorry I missed that request from your previous post! So, logs/membranesIndexes.txt
and configuration/particleMembraneIndex.txt
compare the same.
However, logs/membranes.txt
and configuration/membranes.txt
are different, because logs/membranes.txt
is empty... I'm not sure why.
Hi @NHDaly. I've just found a bug with absolute path in configuration loader fixed it. Please check work of Sibernetic now. Thanks
@skhayrulin sibernetic no longer segafaults under linux, but why is it not displaying the worm?
@msasinski Is it displaying anything or nothing:)? It should display a scene with cube with mebranes and few number of liquid particles inside the cube, this scene is default for testing if you want to load worm you should change this generateWormBodyConfiguration to 1 in file owPhysicsConstant.h this line.We should think about putting this in input arguments for Sibernetic when run program
it's displaying the cube, however changing generateWormBodyConfiguration to 1 gives me a blank window.. I will check it on a faster machine later tonight, but it seems like this is still unusable.
Sibernetic reports:
FPS: 0.036 fps
Hi @skhayrulin, that fixed everything, thanks! :+1: Oh man, yeah, that was a silly bug. Glad to have it working! I do in fact see the cube as you describe. I'll play more with it in a bit!
The segfault is fixed in the master branch as of #44.
Thanks for help @NHDaly!
I'm not sure if this is related to #21 or #22, but after I built Sibernetic and ran it, it crashes after about 3 seconds.
Here's what I printed from the command-line:
And here's some output from running it in GDB:
And finally, if it helps, here's my stacktrace: