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openworm / tests

OpenWorm tests across various repos
MIT License
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Post build failures of the MuscleModel.ipynb notebook due to absence of c302 module. #8

Closed russelljjarvis closed 6 years ago

russelljjarvis commented 6 years ago

I am finding that installing CElegansNeuroML and ChannelWorm is still not sufficient to to import the c302 module.

rgerkin commented 6 years ago

Are you running pip install -e .[channels,cells] --process-dependency-links from the tests directory? If you don't you may be targeting the wrong branch of CElegansNeuroML which does not contain an importable c302. I am able to run and pass all the tests (which include importing c302) when I install using the pip install -e .[channels,cells] --process-dependency-links.

rgerkin commented 6 years ago

I have a working Docker container if you want to use that.

russelljjarvis commented 6 years ago

Oh I didn't notice the argument .[channels,cells] to pip install.

Yes please link me to the Dockerfile.

rgerkin commented 6 years ago

https://github.com/openworm/tests/blob/master/Dockerfile