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orangeSi / bam2msa

convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region
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index error #1

Closed Huanle closed 2 years ago

Huanle commented 2 years ago

Hi @orangeSi , thanks for developing this useful tool. I ran into an error shown below when trying it out. Can you help me sort it out?

Thanks a lot.

$ ./src/bam2msa -h
Unhandled exception: Index out of bounds (IndexError)
  from /usr/share/crystal/src/gc/boehm.cr:110:5 in 'parse_and_run'
  from /mnt/bam2msa.cr:487:1 in '__crystal_main'
  from /usr/share/crystal/src/crystal/main.cr:110:5 in 'main'
  from ???
  from ???
orangeSi commented 2 years ago

src/bam2msa --help or src/bam2msa both will output the help~