Closed NickKramer87 closed 1 month ago
Progress Updates 6/21:
Travis Haussler oh, btw, 5500 is too large a set to run, I am still working on how to expand the capabilities for the program, do something less than 2500 for now to have it finish. Also for context, running -N 1000 takes about 15 min4 and its fairly linear until it just breaks somewhere between N 1000 and N 5000 (which, again I am investigating)
Travis Haussler I found a key area of date calculation that needs to be vectorized in order to run much more efficiently.
As a user of the Orchid Initiative code, I want it to run as quickly as possible so that I can generate as large a patient dataset as I need in the shortest possible time. In order to accomplish this, I must become familiar with the timescales of the existing code in order to identify any potential bottlenecks.
Developer Guide: https://github.com/orchid-initiative/synthetic-database-project/blob/main/documentation/DEVELOPER_GUIDE.md
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