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orchid-initiative
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synthetic-database-project
MIT License
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Automatic Summary Generation
#59
NickKramer87
opened
10 months ago
2
Diagnosis/Procedure Code Formatting
#58
NickKramer87
opened
10 months ago
3
Database Generation Instructions
#57
NickKramer87
closed
1 month ago
2
Patient Gender Specification
#56
NickKramer87
opened
10 months ago
1
Diagnosis Formatting Review
#55
iqtang
closed
11 months ago
1
Refactor arg parsing and switch our core run into a "main" function
#54
TravisHaussler
closed
1 year ago
0
Main args edit
#53
TravisHaussler
closed
1 year ago
1
Split out the functionality of running the Synthea simulation from formatting the output.
#52
rileeki
opened
1 year ago
0
Fill in the homeless indicator field
#51
rileeki
opened
1 year ago
0
Procedure Formatting Review
#50
iqtang
closed
1 year ago
0
Put run_synthea.py driver code into main function
#49
masonium
opened
1 year ago
0
Fixed Width Conversion Review
#48
iqtang
closed
1 year ago
4
add in command line arguments for encounter type and dropping of data…
#47
TravisHaussler
closed
1 year ago
0
Updated jar_file so it uses general path
#46
iqtang
closed
1 year ago
0
fixes issue with lack of information about git
#45
masonium
closed
1 year ago
2
demonstrate branching and pull requests
#44
masonium
closed
1 year ago
0
Fill out the "Expected Source of Payment" fields - Payer Category, Type of Coverage, and Plan Code Number
#43
rileeki
opened
1 year ago
0
Organization Onboarding
#42
rileeki
closed
1 year ago
0
Read up on the OHDSI ETL utility already written in R: https://github.com/OHDSI/ETL-Synthea
#41
rileeki
opened
1 year ago
0
Write up a post about CMS's Synthetic Medicare Claims PUFs
#40
rileeki
opened
1 year ago
0
Read up on the OMOP Common Data Model (https://www.ohdsi.org/data-standardization/)
#39
rileeki
opened
1 year ago
0
Simulate the 2021 data for Keck Hospital of USC (OSHPD #106194219) & compare to publicly available stats
#38
rileeki
opened
1 year ago
3
Fix the fields that have been identified as needed in the summary statistics and that are not complete: prioritize the 'yellow' fields and then the 'blue' fields on the list on: https://docs.google.com/spreadsheets/d/1uWe-IaOa1SV7UIm4N8fs-ym2XtGVVCDMKyDE3fL8oQ8/edit#gid=1477458142
#37
Dior13
opened
1 year ago
8
Database Summary Validation
#36
Dior13
opened
1 year ago
0
Current database enhancement: looking at fields currently available (not in summary statistics) and identify which ones are not filled correctly/missing/wrong format. What other fields might be useful?
#35
Dior13
closed
1 year ago
0
Current database enhancement: adding other types of claims aside IP hospital discharge data (first, emergency dept)
#34
Dior13
opened
1 year ago
1
Identify which fields are needed for the summary statistics and if the format and values are correct.
#33
Dior13
closed
1 year ago
2
As a developer (Rhonda), I want access to a cloud server so that I can do my work.
#32
rileeki
closed
1 year ago
0
Output in Fixed Width Format
#31
Dior13
opened
1 year ago
0
Automatic Summary Generation
#30
rileeki
opened
1 year ago
0
As a database user, I want to see diagnosis and procedure codes in ICD-10 format (not SNOMED) so I can interpret the data as I would with real CA hospital data.
#29
rileeki
opened
1 year ago
3
Database Generation Instruction Manual
#28
rileeki
opened
1 year ago
0
Public Access Point (database user)
#27
rileeki
closed
1 year ago
0
As a summary user, I want to be able to access a DQR so I can decide if the dataset will meet my needs.
#26
rileeki
closed
1 year ago
0
As a database user (Stef), I want to be able to see a combined dataset for the whole population, so I can start exploring the data.
#25
rileeki
closed
1 year ago
0
As a programmer (Lisa), I want to be able to analyze how long a similation takes, so I can find ways to minimize run time
#24
rileeki
closed
1 year ago
0
As a database creator (Riley), I want to be able to specify input parameters using the new input spec Stef designed, so I have flexibility in choosing my parameters without changing the code.
#23
rileeki
closed
1 year ago
0
As a dev team member, I want to be able to access and manipulate the synthetic database from a central, but private location so I can QA, develop summary statistics, and visually inspect the data
#22
rileeki
closed
1 year ago
0
As a database creator, I want to be able to set up a virtual environment, so I can run the Python packages I need
#21
rileeki
closed
1 year ago
0
As a database user, I want the data in IP CA state data claims format, so I can easily read it in the way that real data would be read in.
#20
rileeki
closed
1 year ago
0
As a database creator (Lisa), I need an easy mechanism for turning the server on and off so that it's only running on demand, in order to minimize cost.
#19
rileeki
closed
1 year ago
0
As a programmer, I want to know what I need to crosswalk between the Synthea output format and the CA state data output format so I can write the program to create "standard" output.
#18
rileeki
closed
1 year ago
0
As a database creator (Lisa), I need a server that is powerful enough and large enough to run Synthea, so I can finish my Synthea user story.
#17
rileeki
closed
1 year ago
0
Male/Female Record Count Specification
#16
rileeki
opened
1 year ago
1
As a database creator (Riley/Lisa), I need to have a consistent input spec design in order to eliminate the need to hard code the number of records to simulate.
#15
rileeki
closed
1 year ago
0
Synthea lisa
#14
lisasnortheim
closed
1 year ago
0
Create synthetic datasets
#13
rileeki
opened
1 year ago
3
Data Cleaning
#12
aepstein27
closed
1 year ago
0
Data Report Out
#11
aepstein27
closed
1 year ago
0
Identify and set up data platforms/programs
#10
aepstein27
closed
1 year ago
0
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