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org-arl / UnderwaterAcoustics.jl

Julia toolbox for underwater acoustic modeling
MIT License
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Reversal of transmission loss plots? #31

Closed mchitre closed 3 years ago

mchitre commented 3 years ago

Some users have reported inversion of depth-axis on transmission loss plot. See #28.

apatlpo commented 3 years ago

Here is some data about this

image

Transmission loss matrix is:

julia> x = transmissionloss(pm, tx, rx)
1000×200 Matrix{Float32}:
 18.9392  17.1546  17.0453  17.27    …  Inf      Inf      Inf      Inf
 18.9853  16.9233  17.2085  17.7871     Inf      Inf      Inf      Inf
 18.9174  16.6478  17.2531  18.1774     Inf      Inf      Inf      Inf
 18.9517  16.4985  17.3662  18.6668     Inf      Inf      Inf      Inf
 19.021   16.3625  17.4207  19.1879     82.2811  82.8019  83.327   83.8563
 19.102   16.2447  17.4394  19.7327  …  77.1372  77.6714  78.2099  78.7527
 19.215   16.172   17.4311  20.2512     74.259   74.8039  75.3531  75.9064
 19.3495  16.1001  17.3774  20.8074     71.9296  72.488   73.0502  73.6163
  ⋮                                  ⋱
 50.6657  50.5566  50.4011  50.219      47.8584  47.6233  47.4368  47.3121
 50.6689  50.5552  50.3944  50.2074     47.8977  47.6699  47.4861  47.3586
 50.6706  50.5522  50.3867  50.1954     47.9324  47.713   47.5337  47.4053
 50.6708  50.5477  50.3777  50.1829  …  47.9621  47.752   47.5788  47.4516
 50.6694  50.5415  50.3676  50.17       47.987   47.7866  47.6208  47.4966
 50.6665  50.5338  50.3562  50.1565     48.0071  47.8164  47.6591  47.5397
 50.662   50.5245  50.3437  50.1425     48.0227  47.8414  47.6932  47.5802
 50.6562  50.5138  50.33    50.128      48.0341  47.8616  47.7229  47.6174

Code

using UnderwaterAcoustics
using Plots

env = UnderwaterEnvironment(
    seasurface = Vacuum,
    seabed = SandyClay,
    ssp = SampledSSP(0.0:20.0:40.0, [1540.0, 1510.0, 1520.0], :smooth),
    bathymetry = SampledDepth(0.0:50.0:100.0, [40.0, 35.0, 38.0], :linear)
)

pm = Bellhop(env; gaussian=true)
tx = AcousticSource(0.0, -5.0, 1000.0)
rx = AcousticReceiverGrid2D(1.0, 0.1, 1000, -40.0, 0.2, 200)
x = transmissionloss(pm, tx, rx)
Plots.plot(env; receivers=rx, transmissionloss=x)

Configuration:

(project) pkg> st
      Status `~/Code/cognac_julia/project/Project.toml`
  [91a5bcdd] Plots v1.19.3
  [c3e4b0f8] Pluto v0.15.1
  [0efb1f7a] UnderwaterAcoustics v0.1.1
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version = "1.6.4" [[StochasticDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqJump", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] git-tree-sha1 = "aee830c3b2c96d0e2e9fa40c5cae30d281db0dbd" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" version = "6.35.0" [[StrideArraysCore]] deps = ["ArrayInterface", "ManualMemory", "Requires", "ThreadingUtilities", "VectorizationBase"] git-tree-sha1 = "2525850b6887e217c3cc149ab29eb2a7a6360d37" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" version = "0.1.16" [[StructArrays]] deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"] git-tree-sha1 = "000e168f5cc9aded17b6999a560b7c11dda69095" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" version = "0.6.0" [[SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" [[Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "Sundials_jll"] git-tree-sha1 = "75412a0ce4cd7995d7445ba958dd11de03fd2ce5" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" version = "4.5.3" [[Sundials_jll]] deps = ["CompilerSupportLibraries_jll", "Libdl", "OpenBLAS_jll", "Pkg", "SuiteSparse_jll"] git-tree-sha1 = "013ff4504fc1d475aa80c63b455b6b3a58767db2" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "5.2.0+1" [[SymbolicUtils]] deps = ["AbstractTrees", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs"] git-tree-sha1 = "17fecd52e9a82ca52bfc9d28a2d31b33458a6ce0" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" version = "0.13.1" [[Symbolics]] deps = ["ConstructionBase", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews"] git-tree-sha1 = "dae26a27018d0cad7efd585a9a0012c6a2752a88" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" version = "1.4.2" [[TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" [[TableIOInterface]] git-tree-sha1 = "9a0d3ab8afd14f33a35af7391491ff3104401a35" uuid = "d1efa939-5518-4425-949f-ab857e148477" version = "0.1.6" [[TableTraits]] deps = ["IteratorInterfaceExtensions"] git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39" uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] git-tree-sha1 = "8ed4a3ea724dac32670b062be3ef1c1de6773ae8" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" version = "1.4.4" [[Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" [[Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "593009385e6536dc50baedc2c8bc1a3717ef358f" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.4.5" [[TimeZones]] deps = ["Dates", "Future", "LazyArtifacts", "Mocking", "Pkg", "Printf", "RecipesBase", "Serialization", "Unicode"] git-tree-sha1 = "81753f400872e5074768c9a77d4c44e70d409ef0" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" version = "1.5.6" [[TimerOutputs]] deps = ["ExprTools", "Printf"] git-tree-sha1 = "209a8326c4f955e2442c07b56029e88bb48299c7" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.12" [[Tokenize]] git-tree-sha1 = "eee92eda3cc8e104b7e56ff4c1fcf0d78ca37c89" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.18" [[TreeViews]] deps = ["Test"] git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" version = "0.3.0" [[URIs]] git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" version = "1.3.0" [[UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" [[UnderwaterAcoustics]] deps = ["Colors", "DSP", "DifferentialEquations", "DocStringExtensions", "FFTW", "ForwardDiff", "Interpolations", "LinearAlgebra", "Optim", "Printf", "RecipesBase", "Requires", "SignalAnalysis"] git-tree-sha1 = "b33f62c649f1bcf86b5c6b687577e8c67ee24e45" uuid = "0efb1f7a-1ce7-46d2-9f48-546a4c8fbb99" version = "0.1.1" [[Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[Unitful]] deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] git-tree-sha1 = "a981a8ef8714cba2fd9780b22fd7a469e7aaf56d" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" version = "1.9.0" [[VectorizationBase]] deps = ["ArrayInterface", "Hwloc", "IfElse", "Libdl", "LinearAlgebra", "Static"] git-tree-sha1 = "ddeac5d8aad03c17bdc8efd45246e82fc52d12f4" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" version = "0.20.24" [[VertexSafeGraphs]] deps = ["LightGraphs"] git-tree-sha1 = "b9b450c99a3ca1cc1c6836f560d8d887bcbe356e" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.1.2" [[WAV]] deps = ["Base64", "FileIO", "Libdl", "Logging"] git-tree-sha1 = "1d5dc6568ab6b2846efd10cc4d070bb6be73a6b8" uuid = "8149f6b0-98f6-5db9-b78f-408fbbb8ef88" version = "1.1.1" [[Wayland_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] git-tree-sha1 = "3e61f0b86f90dacb0bc0e73a0c5a83f6a8636e23" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" version = "1.19.0+0" [[Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll"] git-tree-sha1 = "2839f1c1296940218e35df0bbb220f2a79686670" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" version = "1.18.0+4" [[WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] git-tree-sha1 = "59e2ad8fd1591ea019a5259bd012d7aee15f995c" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" version = "0.5.3" [[XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.9.12+0" [[XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.34+0" [[Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" version = "1.6.9+4" [[Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" version = "1.0.9+4" [[Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" version = "1.2.0+4" [[Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" version = "1.1.3+4" [[Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" version = "1.3.4+4" [[Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" version = "5.0.3+4" [[Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" version = "1.7.10+4" [[Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" version = "1.1.4+4" [[Xorg_libXrandr_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" version = "1.5.2+4" [[Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.10+4" [[Xorg_libpthread_stubs_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" version = "0.1.0+3" [[Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" version = "1.13.0+3" [[Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" version = "1.1.0+4" [[Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" version = "0.4.0+1" [[Xorg_xcb_util_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" version = "0.4.0+1" [[Xorg_xcb_util_keysyms_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" version = "0.4.0+1" [[Xorg_xcb_util_renderutil_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" version = "0.3.9+1" [[Xorg_xcb_util_wm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" version = "0.4.1+1" [[Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" version = "1.4.2+4" [[Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" uuid = "33bec58e-1273-512f-9401-5d533626f822" version = "2.27.0+4" [[Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" version = "1.4.0+3" [[Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" [[Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.0+0" [[ZygoteRules]] deps = ["MacroTools"] git-tree-sha1 = "9e7a1e8ca60b742e508a315c17eef5211e7fbfd7" uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.1" [[libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "acc685bcf777b2202a904cdcb49ad34c2fa1880c" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.14.0+4" [[libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "7a5780a0d9c6864184b3a2eeeb833a0c871f00ab" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" version = "0.1.6+4" [[libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" version = "1.6.38+0" [[libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] git-tree-sha1 = "c45f4e40e7aafe9d086379e5578947ec8b95a8fb" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" version = "1.3.7+0" [[nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" [[p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" [[x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "d713c1ce4deac133e3334ee12f4adff07f81778f" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" version = "2020.7.14+2" [[x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "487da2f8f2f0c8ee0e83f39d13037d6bbf0a45ab" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.0.0+3" [[xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" version = "0.9.1+5"
mchitre commented 3 years ago

Thanks @apatlpo, let me try to reproduce.

mchitre commented 3 years ago

This doesn't seem to be a plotting problem, but rather of the results coming in from BELLHOP:

julia> x = transmissionloss(pm, tx, rx)
1000×200 Matrix{Float32}:
 Inf      Inf      Inf      Inf      Inf      …  15.7287  17.27    17.0453  17.1546  18.9392
 Inf      Inf      Inf      Inf      Inf         15.6722  17.7871  17.2085  16.9233  18.9853
 Inf      Inf      Inf      Inf      Inf         15.5425  18.1774  17.2531  16.6478  18.9174
 Inf      Inf      Inf      Inf      Inf         15.5327  18.6668  17.3662  16.4985  18.9517
 83.8563  83.327   82.8019  82.2811  81.7646     15.5771  19.1879  17.4207  16.3625  19.021
 78.7527  78.2099  77.6714  77.1372  76.6073  …  15.668   19.7327  17.4394  16.2447  19.102
  ⋮                                           ⋱   ⋮
 47.4053  47.5337  47.713   47.9324  48.1753     50.0093  50.1954  50.3867  50.5522  50.6706
 47.4516  47.5788  47.752   47.9621  48.1953  …  49.9944  50.1829  50.3777  50.5477  50.6708
 47.4966  47.6208  47.7866  47.987   48.211      49.98    50.17    50.3676  50.5415  50.6694
 47.5397  47.6591  47.8164  48.0071  48.2228     49.9658  50.1565  50.3562  50.5338  50.6665
 47.5802  47.6932  47.8414  48.0227  48.2315     49.9519  50.1425  50.3437  50.5245  50.662
 47.6174  47.7228  47.8616  48.0341  48.2376     49.9383  50.128   50.33    50.5137  50.6561

You can see this has flipped columns as compared to results reported by @apatlpo. This is what flips the plot vertically.

Can you check what version of BELLHOP you are using @apatlpo ?

elaprime commented 3 years ago

@mchitre how would you check the version of bellhop? and is there a way to get the plots oriented correctly?

this is what i am getting from our data with the source set at -5m

image

apatlpo commented 3 years ago

I'm using the latest version available from the Acoustics Toolbox website and labelled 2020_11_4. I compiled the source code on a mac.

mchitre commented 3 years ago

@elaprime To fix the orientation in your plots is simple:

Plots.plot(env; receivers=rx, transmissionloss=reverse(x; dims=2))

This should solve your problem for now.

However, we still need to track this issue and figure out why the inversion in the first place. @apatlpo / @elaprime can you please run this code (debug mode) on your machine and zip up the files in the displayed folder name (before pressing ENTER to delete intermediate files) with the BELLHOP inputs and outputs for me to examine?

using UnderwaterAcoustics
using Plots

env = UnderwaterEnvironment(
    seasurface = Vacuum,
    seabed = SandyClay,
    ssp = SampledSSP(0.0:20.0:40.0, [1540.0, 1510.0, 1520.0], :smooth),
    bathymetry = SampledDepth(0.0:50.0:100.0, [40.0, 35.0, 38.0], :linear)
)

pm = Bellhop(env; gaussian=true, debug=true)
tx = AcousticSource(0.0, -5.0, 1000.0)
rx = AcousticReceiverGrid2D(1.0, 0.1, 1000, -40.0, 0.2, 200)
x = transmissionloss(pm, tx, rx)

Thanks.

elaprime commented 3 years ago

model_EL.zip

mchitre commented 3 years ago

That was very helpful. I am now able to reproduce the problem, and fixing it should be possible.

The essential problem was a change in sorting of receiver depths in BELLHOP, somewhere between the July 2018 and October 2020 version (I don't have copies of all versions to check exactly when, and the change logs in BELLHOP aren't explicit about it). The change requires us to interpret the output shd file flipped in the depth axis, if the BELLHOP version is 2020. I need to find a way to automatically detect this reliably, so that the Julia wrapper works with both versions.

mchitre commented 3 years ago

Fixed.

@elaprime, @apatlpo Please try the latest master:

pkg> add https://github.com/org-arl/UnderwaterAcoustics.jl#master

and see if the problem is fixed for you. After confirmation, I'll release.

apatlpo commented 3 years ago

works like a charm, thanks @mchitre !

If detecting which version of Bellhop is tricky, adding an option in the call to Bellhop in order to flip the depth axis output (for older versions of Bellhop) may suffice.

mchitre commented 3 years ago

Thanks for the quick confirmation @apatlpo.

The current solution sorts the depths beforehand, and therefore avoids having to detect BELLHOP version. So this should be robust across older and newer BELLHOP binaries.

apatlpo commented 3 years ago

great to hear ! thx