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ornl-oxford / genben

Benchmarking of software frameworks, and systems for storage and compute over large-scale genomic data.
MIT License
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VCF to Zarr example #1

Closed alimanfoo closed 6 years ago

alimanfoo commented 6 years ago

This PR adds a notebook with example code for converting the human 1000 genomes phase 3 data from VCF to Zarr.

Also some files to define a conda environment so Python package versions are explicit.

alimanfoo commented 6 years ago

Initial notebook is here. Comments very welcome.

alimanfoo commented 6 years ago

cc @ebegoli.