Added pull of small, dedicated VCF files into unit tests from the test FTP server.

ornl-oxford / genben

Benchmarking of software frameworks, and systems for storage and compute over large-scale genomic data.

MIT License

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Added pull of small, dedicated VCF files into unit tests from the test FTP server. #24

Open ebegoli opened 6 years ago

ebegoli commented 6 years ago

We have two small VCF files at the Sanger FTP, and they should be visible at the following location:

ftp://ngs.sanger.ac.uk/production/ag1000g/mics/genomics-benchmarks/

These are both constructed by taking the first N lines from the chromosome 22 VCF file from the human 1000 genomes phase 3 dataset, where N is either 1000 (giving file size ~100K) or 10000 (file size ~1M).

alimanfoo commented 6 years ago

Just to note a typo on the URL, probably my fault. Here's the correct URL:

ftp://ngs.sanger.ac.uk/production/ag1000g/misc/genomics-benchmarks/